PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G047700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 307aa MW: 33289.6 Da PI: 6.5939 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.6 | 2.6e-35 | 12 | 107 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++rr+C++dC+la+yfp+++p+ f+n+h+lFG++n+lk+l+++ +e+r++am++++ye++a+ +P G+v +i +lq++++q+ Seita.4G047700.1.p 12 ACAACKYQRRRCTPDCPLAEYFPHDRPRVFRNAHRLFGVNNILKTLARAGPEKRREAMHCIIYESHAWDINPATGCVPIIDDLQRRICQAG 102 7****************************************************************************************98 PP DUF260 92 aelal 96 +l + Seita.4G047700.1.p 103 LDLRR 107 77765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.658 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.9E-34 | 12 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MAAGGAGAGA AACAACKYQR RRCTPDCPLA EYFPHDRPRV FRNAHRLFGV NNILKTLARA 60 GPEKRREAMH CIIYESHAWD INPATGCVPI IDDLQRRICQ AGLDLRRVYA AIRAYRAAAA 120 AAQGRPVPDS DGGDPSASAS SPAPPPPFQF QPAMGNNYDE ATAEAYGGGG LPFLMYGGDQ 180 QQMMMNAAAP DNENIALQMP PWMMQPPQYD MASATAVADM AAGKVVPQLQ QQDHRFLVDA 240 TMAHQSRNQQ KPIVPIHLPA ELDDKMSYFV NGMDGDSEMH HESTSMDSSE KKARQAPKME 300 DANGFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-19 | 7 | 98 | 7 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-19 | 7 | 98 | 7 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G047700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813245.1 | 1e-137 | protein LATERAL ORGAN BOUNDARIES-like | ||||
TrEMBL | A0A368QQZ8 | 0.0 | A0A368QQZ8_SETIT; Uncharacterized protein | ||||
STRING | Si008052m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15459 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 8e-24 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G047700.1.p |