PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G039800.1.p
Common NameLOC101771752, SETIT_008587mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 200aa    MW: 20971.2 Da    PI: 4.5323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G039800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-182171155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ykGVr++k +grW++eIr p++   r r++lg+++t+e+Aa+a + a+ +l+g
  Seita.4G039800.1.p 21 TKYKGVRRRK-WGRWASEIRLPNS---RERIWLGSYDTPEKAARAFDGAAVCLRG 71
                        69*****998.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-112171IPR001471AP2/ERF domain
CDDcd000181.60E-252181No hitNo description
SuperFamilySSF541712.55E-182281IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-262281IPR001471AP2/ERF domain
PROSITE profilePS5103222.5762281IPR001471AP2/ERF domain
SMARTSM003802.5E-282287IPR001471AP2/ERF domain
PRINTSPR003672.3E-92334IPR001471AP2/ERF domain
PRINTSPR003672.3E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSSLPPPPEQ PHAGSSSGEE TKYKGVRRRK WGRWASEIRL PNSRERIWLG SYDTPEKAAR  60
AFDGAAVCLR GPGGADGLNF PGSPPAVAGL TTDPEEVRAA AMSHANKVPT SFTGAPSSEV  120
TEWAGTAAVP APAPLQVSTE TFDWSELMAN PPPLFSPTVV GSHAHLPAES LTPATDVYMD  180
ETESDSCPGL WSFDSGDAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1419811172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12329KGVRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G039800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966651.11e-142ethylene-responsive transcription factor ERF017
TrEMBLK3Y3021e-140K3Y302_SETIT; Uncharacterized protein
STRINGSi008587m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-40ERF family protein