PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G039600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 192aa    MW: 19946.2 Da    PI: 4.9621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G039600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-181666256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        +ykGVr++k +grW++eIr p   + +  r++lg+++ +e+Aa+a +aa ++l+g+
  Seita.4G039600.1.p 16 KYKGVRRRK-WGRWASEIRLP---N-CrDRIWLGSYDAPEKAARAFDAAYLCLRGP 66
                        8*****998.**********8...3.45*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-241575IPR001471AP2/ERF domain
CDDcd000181.03E-231675No hitNo description
SuperFamilySSF541712.55E-171675IPR016177DNA-binding domain
SMARTSM003803.4E-271681IPR001471AP2/ERF domain
PROSITE profilePS5103221.8521675IPR001471AP2/ERF domain
PfamPF008471.2E-101665IPR001471AP2/ERF domain
PRINTSPR003671.8E-81728IPR001471AP2/ERF domain
PRINTSPR003671.8E-83955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MQPNAAAAAS PSGERKYKGV RRRKWGRWAS EIRLPNCRDR IWLGSYDAPE KAARAFDAAY  60
LCLRGPGGAD GLNFPGSPPG VRRTSDPNEV YAAAVSHADP AAADVDPWDA IQPLPEPTLQ  120
AHGDVAPMEP APAPAAPPAP LQLLADLPPL FSPTEVGSHA YLLPASPTAA DANTMEENGS  180
GSGSGSGLWS F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G039600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700624.12e-97ethylene-responsive transcription factor ERF017
SwissprotQ84QC22e-29ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A368QSH71e-133A0A368QSH7_SETIT; Uncharacterized protein
STRINGSi008682m3e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]