PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G029000.1.p
Common NameLOC101782004, SETIT_007082mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 272aa    MW: 28195.9 Da    PI: 9.6366
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G029000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.3e-2088142256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++k+q  +Lee+F+++++++ +++  LA++lgL  rqV vWFqNrRa+ k
  Seita.4G029000.1.p  88 RKKLRLSKDQAAVLEECFKMHHTLTPKQKVALASSLGLRPRQVEVWFQNRRARTK 142
                         788899***********************************************98 PP
2HD-ZIP_I/II126.31.3e-4088177191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL kev+eLr +l
  Seita.4G029000.1.p  88 RKKLRLSKDQAAVLEECFKMHHTLTPKQKVALASSLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCEQLAEENRRLAKEVAELR-AL 177
                         69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-1971138IPR009057Homeodomain-like
SuperFamilySSF466892.14E-1882145IPR009057Homeodomain-like
PROSITE profilePS5007116.58484144IPR001356Homeobox domain
SMARTSM003894.1E-1786148IPR001356Homeobox domain
CDDcd000868.15E-1688145No hitNo description
PfamPF000465.5E-1788142IPR001356Homeobox domain
PRINTSPR000311.6E-5115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5124140IPR000047Helix-turn-helix motif
PfamPF021834.7E-11144177IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.1E-21144187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAPQSLDLGL SLGLGLAALQ PSFCYSGNAA VAAAAEREAS PAAAEERERR CSPAGSPVSS  60
GSGSGKRAAA ERSAGAGSGD EDDDGAARKK LRLSKDQAAV LEECFKMHHT LTPKQKVALA  120
SSLGLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRWCEQL AEENRRLAKE VAELRALNAA  180
AAAPAPAPPL TTLTMCLSCR RVASSSSNPT NVPAAHPHAH IGTANAAVAS PAAPATTLPG  240
HRQFFCGFRD AGAAAYGTSS GLAAKAVKAA R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G029000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9681200.0EU968120.1 Zea mays clone 314746 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964495.10.0homeobox-leucine zipper protein HOX28
SwissprotA2Y9315e-67HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE55e-67HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLK3XYS40.0K3XYS4_SETIT; Uncharacterized protein
STRINGSi007082m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-52homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]