PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.4G020600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 330aa MW: 36550.4 Da PI: 9.9441 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 388 | 1.4e-118 | 2 | 329 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye......paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkll 82 md+ g+re r+++ +y+ ++lk++ +++l+++++e+d++irer++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l+ Seita.4G020600.2.p 2 MDNLGHREngRQRPdQYKavhtqwMMPQLKDHHSMNLLALMNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMAERNAAIVERDNALA 92 9999*99999****99998886543389*************************************************************** PP GAGA_bind 83 alllvensla.salpvgvqv...lsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163 al+l++++ +++++g + l+gtk+i++++qls+ ql+ds+++ +re++++ea+pi +a++++ + kk++k++++++p+++ Seita.4G020600.2.p 93 ALELARTNGFnMNNGNGFHQvppLNGTKNIHNHDQLSHvqtspLQLADSPYDhTREMHISEAYPIATAPSSIGKGKKPRKNSSQASPLKRP 183 **998887654555555544112689*********998899999********9*************************************9 PP GAGA_bind 164 ak..kkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPv 246 + +k+kk + ++k+ +++ e+ +k+e+k++dl+ln+v +Dest+P+P+CsCtG lrqCYkWGnGGWqS+CCt+++S+yPLPv Seita.4G020600.2.p 184 SGvlRKTKKVAGDWKNGGMSGGGEDsarasvMKNEWKDQDLGLNQVPFDESTMPAPACSCTGELRQCYKWGNGGWQSSCCTMSMSMYPLPV 274 99887777788999999998866445788889*********************************************************** PP GAGA_bind 247 stkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +++rr+aR++grKmS++af+klL++LaaeG+dls+pvDLkdhWAkHGtn+++tir Seita.4G020600.2.p 275 MPNRRHARMGGRKMSGSAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 329 ******************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 6.0E-96 | 2 | 329 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 1.3E-165 | 2 | 329 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MMDNLGHREN GRQRPDQYKA VHTQWMMPQL KDHHSMNLLA LMNEKDSAIR ERDHALAEKK 60 AAIAERDMAF AQRDAAMAER NAAIVERDNA LAALELARTN GFNMNNGNGF HQVPPLNGTK 120 NIHNHDQLSH VQTSPLQLAD SPYDHTREMH ISEAYPIATA PSSIGKGKKP RKNSSQASPL 180 KRPSGVLRKT KKVAGDWKNG GMSGGGEDSA RASVMKNEWK DQDLGLNQVP FDESTMPAPA 240 CSCTGELRQC YKWGNGGWQS SCCTMSMSMY PLPVMPNRRH ARMGGRKMSG SAFTKLLSRL 300 AAEGHDLSTP VDLKDHWAKH GTNRYITIR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.4G020600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF184759 | 0.0 | KF184759.1 Saccharum hybrid cultivar R570 clone BAC 015H09 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964426.1 | 0.0 | barley B recombinant-like protein D | ||||
Refseq | XP_004964427.1 | 0.0 | barley B recombinant-like protein D | ||||
Swissprot | Q5VSA8 | 0.0 | BBRD_ORYSJ; Barley B recombinant-like protein D | ||||
TrEMBL | A0A368QQ32 | 0.0 | A0A368QQ32_SETIT; Uncharacterized protein | ||||
STRING | Si006972m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-102 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.4G020600.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|