PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.4G010200.3.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 555aa MW: 58176.8 Da PI: 4.3138

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.4G010200.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.3e-13	301	344	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e+Er+RR+++N+a+ +Lr+l+P+ +K++ a+iL A++YI Lq Seita.4G010200.3.p 301 EAERKRRKKLNDALYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 344 89*******************7.....7*************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.43E-14	292	348	No hit	No description
SuperFamily	SSF47459	2.36E-17	292	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.005	294	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-16	300	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-11	301	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-15	301	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.0014	428	492	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0048658	Biological Process	anther wall tapetum development
GO:0005634	Cellular Component	nucleus
GO:0000978	Molecular Function	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MGGGDHRCMA ATAAAAASAG YGGGSVEAAL RPLVGAHAWD YCICWRLSPD QRFLEMTGLC 60 CSSELEAQVS ALGELPSSIP LDSSSAGMHA EAMMSNQPIW QTSCVPAELP ASCSTELGSA 120 AGPRTRLLVP IAGGLVELFA ARYMVEDEQM AELVREQCGV PTRATEGEGD EGGAAVHIWP 180 EAPGFAWDGA DPQRMYGAVP PSLSQFDAAG DPFLAAPPPG VVDDAAAAGW QYATAAGSEP 240 SVVAAQQEQH GMARAGGTDS GSEGSDLQGD PEDDGDGDAQ GRGGGDGGKG GSKRQQCKNL 300 EAERKRRKKL NDALYKLRSL VPNITKMDRA SILGDAIDYI VGLQNQVKAL QDDLEDPADG 360 APDVLLDHLP PASLVGLEND DSPRASLQQP PASKRARAAA AAPAEEEKGH DMEPQVEVQQ 420 VEANGFFLQV LCEHKPGRFV RLMDAVNALG LDITNVNVTS YKTLVLNVLR VVRRDNEVTV 480 QADRVRDSLL EVTRESYGVW SAPAPVVGSS GSIDVKLDCV DVKLDGGVDV QAPAAAATTE 540 DHYGGYNHLL QYLA*

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MGGGDHRCMA ATAAAAASAG YGGGSVEAAL RPLVGAHAWD YCICWRLSPD QRFLEMTGLC  60
CSSELEAQVS ALGELPSSIP LDSSSAGMHA EAMMSNQPIW QTSCVPAELP ASCSTELGSA  120
AGPRTRLLVP IAGGLVELFA ARYMVEDEQM AELVREQCGV PTRATEGEGD EGGAAVHIWP  180
EAPGFAWDGA DPQRMYGAVP PSLSQFDAAG DPFLAAPPPG VVDDAAAAGW QYATAAGSEP  240
SVVAAQQEQH GMARAGGTDS GSEGSDLQGD PEDDGDGDAQ GRGGGDGGKG GSKRQQCKNL  300
EAERKRRKKL NDALYKLRSL VPNITKMDRA SILGDAIDYI VGLQNQVKAL QDDLEDPADG  360
APDVLLDHLP PASLVGLEND DSPRASLQQP PASKRARAAA AAPAEEEKGH DMEPQVEVQQ  420
VEANGFFLQV LCEHKPGRFV RLMDAVNALG LDITNVNVTS YKTLVLNVLR VVRRDNEVTV  480
QADRVRDSLL EVTRESYGVW SAPAPVVGSS GSIDVKLDCV DVKLDGGVDV QAPAAAATTE  540
DHYGGYNHLL QYLA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	302	309	ERKRRKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269\|PubMed:17138695, ECO:0000269\|PubMed:19825565, ECO:0000269\|PubMed:23385589}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.4G010200.3.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964331.1	0.0	transcription factor TDR-like
Refseq	XP_004964332.1	0.0	transcription factor TDR-like
Refseq	XP_022681697.1	0.0	transcription factor TDR-like
Swissprot	Q6YUS3	1e-178	TDR_ORYSJ; Transcription factor TDR
TrEMBL	A0A368QPG3	0.0	A0A368QPG3_SETIT; Uncharacterized protein
STRING	Si006199m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	7e-46	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.4G010200.3.p

Publications ? help Back to Top
Endo M, et al. High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development. Plant Cell Physiol., 2009. 50(11): p. 1911-22 [PMID:19808807] Xu J,Wu M,He C [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae]. Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61 [PMID:20387456] Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996] Zhang D, et al. OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice. Plant Physiol., 2010. 154(1): p. 149-62 [PMID:20610705] Senapati PK,Behera S Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock. Bioresour. Technol., 2012. 117: p. 99-106 [PMID:22613886] Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content]. Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7 [PMID:23285852] Li L, et al. An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development. Planta, 2015. 241(1): p. 157-66 [PMID:25236969] Yi J, et al. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol., 2016. 170(3): p. 1611-23 [PMID:26697896]