PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G010200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 555aa MW: 58176.8 Da PI: 4.3138 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.1 | 3.3e-13 | 301 | 344 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e+Er+RR+++N+a+ +Lr+l+P+ +K++ a+iL A++YI Lq Seita.4G010200.1.p 301 EAERKRRKKLNDALYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 344 89*********************7.....7***************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.43E-14 | 292 | 348 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-17 | 292 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.005 | 294 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-16 | 300 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.2E-11 | 301 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-15 | 301 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.0014 | 428 | 492 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MGGGDHRCMA ATAAAAASAG YGGGSVEAAL RPLVGAHAWD YCICWRLSPD QRFLEMTGLC 60 CSSELEAQVS ALGELPSSIP LDSSSAGMHA EAMMSNQPIW QTSCVPAELP ASCSTELGSA 120 AGPRTRLLVP IAGGLVELFA ARYMVEDEQM AELVREQCGV PTRATEGEGD EGGAAVHIWP 180 EAPGFAWDGA DPQRMYGAVP PSLSQFDAAG DPFLAAPPPG VVDDAAAAGW QYATAAGSEP 240 SVVAAQQEQH GMARAGGTDS GSEGSDLQGD PEDDGDGDAQ GRGGGDGGKG GSKRQQCKNL 300 EAERKRRKKL NDALYKLRSL VPNITKMDRA SILGDAIDYI VGLQNQVKAL QDDLEDPADG 360 APDVLLDHLP PASLVGLEND DSPRASLQQP PASKRARAAA AAPAEEEKGH DMEPQVEVQQ 420 VEANGFFLQV LCEHKPGRFV RLMDAVNALG LDITNVNVTS YKTLVLNVLR VVRRDNEVTV 480 QADRVRDSLL EVTRESYGVW SAPAPVVGSS GSIDVKLDCV DVKLDGGVDV QAPAAAATTE 540 DHYGGYNHLL QYLA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 302 | 309 | ERKRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G010200.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964331.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_004964332.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_022681697.1 | 0.0 | transcription factor TDR-like | ||||
Swissprot | Q6YUS3 | 1e-178 | TDR_ORYSJ; Transcription factor TDR | ||||
TrEMBL | A0A368QPG3 | 0.0 | A0A368QPG3_SETIT; Uncharacterized protein | ||||
STRING | Si006199m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5530 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 7e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G010200.1.p |