PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G009800.3.p | ||||||||
Common Name | LOC101753501, SETIT_006199mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 543aa MW: 57094.7 Da PI: 4.4165 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.4e-13 | 293 | 336 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+a+ +Lr+l+Pk +K++ a+iL A++YI Lq Seita.4G009800.3.p 293 VAERKRRQKLNNALYKLRSLVPKI-----TKMDRASILGDAIDYIVGLQ 336 58*********************7.....7***************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.193 | 286 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-17 | 288 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-15 | 292 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.63E-13 | 293 | 340 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-15 | 293 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 294 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00386 | 420 | 484 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MGGGDHPCMA ATAAASAGYG GGSVEAALRP LVGADAWDYC IYWRLSLDER FLEMTGLCCS 60 SEFEAQVSAH GELPSSIPLD SSSAGMHAEA IMSNQPIWQT SSCVPELPTS YSTELGSAGP 120 RTRLLVPIAG GLVELFAARY MAEDEQMAKL VMAQCGVPAR ATEGEGDEGG AAVHTWPEAP 180 GFAWDGADPQ RMYGAVPPSL SLFDAAGDPF LAAPPPGVVD DAAAAGWQYA AAAGSEPSVV 240 AAQQEQHGAA RTGGADSGSE GSDLLGDPEG DGDAQGRGGG KGDGKRQHCK NLVAERKRRQ 300 KLNNALYKLR SLVPKITKMD RASILGDAID YIVGLQNQVK ALQDELEDPA DGAPDVLLDH 360 PPPASLVGLE NDDSPRASLQ QPPASKRARV PAAAPTEEDK GHDMEPQVEV RQVEANEFFL 420 QVLCEHKPGR FVRLMDAVNA LGLDVTNVNV TSYKTLVLNV LRVVRRDNEV AVQADRVRDS 480 LLEVTRESYG VWSSAVGSSG SIDVKLNCVD VKLDGGVDVQ APAAAATAED HYGGYNHLQY 540 LA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 294 | 299 | ERKRRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G009800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012700935.1 | 0.0 | transcription factor TDR | ||||
Refseq | XP_012700936.1 | 0.0 | transcription factor TDR | ||||
Refseq | XP_022681698.1 | 0.0 | transcription factor TDR | ||||
Refseq | XP_022681699.1 | 0.0 | transcription factor TDR | ||||
Swissprot | Q6YUS3 | 0.0 | TDR_ORYSJ; Transcription factor TDR | ||||
TrEMBL | K3XW91 | 0.0 | K3XW91_SETIT; Uncharacterized protein | ||||
STRING | Si006199m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 5e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G009800.3.p |
Entrez Gene | 101753501 |