PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G008000.1.p | ||||||||
Common Name | LOC101780523, SETIT_006790mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 37156 Da PI: 6.5086 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.9 | 1.2e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd++k+ G g+W++ ++ g++R++k+c++rw +yl Seita.4G008000.1.p 15 KGPWTPEEDKLLVDYIKENGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.7e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T eE++l+++++ lG++ W++Ia +++ gRt++++k++w+++l Seita.4G008000.1.p 68 RGRFTDEEEKLIIHLHSILGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.61 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.17E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.29E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 28.063 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-13 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-27 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGRSPCCDQD AGVKKGPWTP EEDKLLVDYI KENGHGSWRR LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGR FTDEEEKLII HLHSILGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLSM 120 GIDPVTHRPR TDLNLLAGIP NLLAAGIPNL AAAAQTTWDI NALRLQADAA KYQLLQGLLR 180 AFAAPPAAPT GVDLMALLAA TGNGGVSQPA AGVDHGTTTR AHQYDGLLNL PALTTVPAAT 240 LPAMSSFSGL LSSFGGALAG DGLSSTTELG HSGASGSSMT AAMAPPLVAA EECNAGGGGM 300 STPCGEETPA SSPFEGLGNL NLDDEFNSDS WRDLLEQMSW LNNPNEQQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-30 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G008000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727665 | 1e-156 | KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964317.1 | 0.0 | transcription factor MYB39 | ||||
Swissprot | Q9S9Z2 | 1e-81 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | K3XXY2 | 0.0 | K3XXY2_SETIT; Uncharacterized protein | ||||
STRING | Si006790m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5529 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 2e-79 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G008000.1.p |
Entrez Gene | 101780523 |
Publications ? help Back to Top | |||
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