PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G003600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 563aa    MW: 59356.5 Da    PI: 6.3445
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G003600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2392.1e-731935592374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel....aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                         v+ Lle+A+  +sgd + a+++Larl+++      p g +p+ R+aa +  AL +rl+ + + l    p s +s+ +++ +laa+k++  +
  Seita.4G003600.1.p 193 VDELLEAARRADSGDSTGAREILARLNHRlptpPPPLGqSPLLRAAALLRDALLRRLLVTPPALP---PGSVSSPLDVALKLAAHKALAGA 280
                         678*************************987665677778******************9333333...4444455569************* PP

                GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa...sRp....egppslRiTgvgspesgskeeleetgerLakfAee 171
                         sP+++f+ +t  qa+l+a+ g++rvH++D+d++ G+ Wp+L+q+La    R+     +pp +++T+++sp s +  el+ t+e L++fA+ 
  Seita.4G003600.1.p 281 SPTVQFASFTSTQALLDALGGARRVHVVDLDVGFGARWPPLMQELAlqwRRSsaaqLPPPGMKVTALVSPGSAHPLELRLTHESLTRFAAD 371
                         **********************************************54223355444599******************************* PP

                GRAS 172 lgvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                         lg++fef+++  + ++   ++   +  pgEa+aV+l l   +          + +++L++vk+l+P vvv++++ + +++ ++ ++ l+ +
  Seita.4G003600.1.p 372 LGIRFEFSAVGFDPFDPSsRPVGVSAAPGEAVAVHLPLGSGTST--------PAPATLRVVKQLRPAVVVCIDHGCHRGDLPLSHHALNVV 454
                         *********9777666442566677778**********776665........4578*********************************** PP

                GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                         +  +a+++sl+a  ++ +++ +kvE+ +l+++++ ++     +       +  W+++l +aGF+pv+ls+ a++qa++llr+++  g++ve
  Seita.4G003600.1.p 455 RSSAAFLESLDAA-GAPADAVAKVEQYILRPRVERLLLLGDCR-------MPPWQAMLASAGFSPVQLSSAAEAQAECLLRRTATPGFHVE 537
                         **********988.7888999****************998876.......89*************************************** PP

                GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                         +++ +l l W++ +Lv+vSaW+
  Seita.4G003600.1.p 538 KRQTALALRWQQSELVTVSAWQ 559
                         *********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.806166539IPR005202Transcription factor GRAS
PfamPF035147.2E-71193559IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MSPSPIQSQA SCHTNSNIIT SDSDAIQSPH ADAVHSNAPP IDMISALPMS NLHDGRAGDG  60
QDEAPAVFPS PATKRLRMSP PPEPTSVLYN RSPSPPTSSS LASSSAPEPP PISAEDWEAV  120
LSGDMAAPPA AARSSQDSCF LRWIMDADAQ VDASDPFFAP PPCQEPCFLQ PQPQPQPPPP  180
LAAADDLEPR AVVDELLEAA RRADSGDSTG AREILARLNH RLPTPPPPLG QSPLLRAAAL  240
LRDALLRRLL VTPPALPPGS VSSPLDVALK LAAHKALAGA SPTVQFASFT STQALLDALG  300
GARRVHVVDL DVGFGARWPP LMQELALQWR RSSAAQLPPP GMKVTALVSP GSAHPLELRL  360
THESLTRFAA DLGIRFEFSA VGFDPFDPSS RPVGVSAAPG EAVAVHLPLG SGTSTPAPAT  420
LRVVKQLRPA VVVCIDHGCH RGDLPLSHHA LNVVRSSAAF LESLDAAGAP ADAVAKVEQY  480
ILRPRVERLL LLGDCRMPPW QAMLASAGFS PVQLSSAAEA QAECLLRRTA TPGFHVEKRQ  540
TALALRWQQS ELVTVSAWQC SR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2223655942375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G003600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964284.10.0scarecrow-like protein 6
TrEMBLA0A368QPH80.0A0A368QPH8_SETIT; Uncharacterized protein
STRINGSi006258m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-66GRAS family protein