PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G408700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 28618.2 Da PI: 9.3409 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.9e-18 | 17 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+q+G+++W++I++ ++ gR++k+c++rw + Seita.3G408700.1.p 17 KGSWSPEEDAQLTRLVEQHGPHRWSLISAAIP-GRSGKSCRLRWCNQ 62 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.6e-16 | 71 | 113 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +++ a++++G++ W+tIar ++ gRt++++k++w++ Seita.3G408700.1.p 71 AFTAHEDAIILGAHARYGNK-WATIARLLP-GRTDNSIKNHWNSN 113 79******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.234 | 12 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.33E-30 | 16 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-17 | 16 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-18 | 17 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-25 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.36E-16 | 19 | 61 | No hit | No description |
PROSITE profile | PS51294 | 17.391 | 68 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.07E-11 | 71 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 71 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-13 | 71 | 113 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MASDAPPPAT AVVVMKKGSW SPEEDAQLTR LVEQHGPHRW SLISAAIPGR SGKSCRLRWC 60 NQLSPEVQHR AFTAHEDAII LGAHARYGNK WATIARLLPG RTDNSIKNHW NSNLRRCRRR 120 AAALAAAGAP STSSRAAAAG GTQQLFLQQD MDSAPPVADQ QPASGLLNPN NHRDDDGALH 180 EPSTSLSLTL GLPLPEPEAG ASATGMKAAD QQPSPLPLRM PEEEGNAQAQ LMAVVRQMVR 240 EEVQRQTGQL AYSLMAAAAW AKGHHR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 8e-39 | 14 | 116 | 1 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 8e-39 | 14 | 116 | 1 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G408700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243228 | 1e-131 | AC243228.1 Panicum virgatum clone PV_ABa011-D10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681066.1 | 1e-171 | transcription factor CSA-like | ||||
TrEMBL | A0A368QP48 | 0.0 | A0A368QP48_SETIT; Uncharacterized protein | ||||
STRING | Si022959m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13544 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 3e-52 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G408700.1.p |