PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G401700.1.p
Common NameLOC101771720, SETIT_022171mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 416aa    MW: 43097.2 Da    PI: 7.8196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G401700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.51.5e-15225271455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++ErrRR++iN++f eL +++P++     kK++Ka+iL  Av+Y+++Lq
  Seita.3G401700.1.p 225 DHIIAERRRREKINQRFIELSTVIPEL-----KKMDKATILGDAVKYVRKLQ 271
                         5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.758221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-19225280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-14226275No hitNo description
PfamPF000105.2E-13226271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-17226280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-17227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLASSKKIAA DREASPAFSL FHLQSSGTGI MDRHMEDSST FLQWAMNQLH HQQPSAAAAA  60
SAYQDGAGAG GSGAAGNSEA VFPSLQALRS GAPQTQPQPV AASVRVRDLT VQVDHRTNSS  120
SSGDSPGGGA AMDHDATTGW SPHTARSRTT GLGGGSNSRP MSWNFSAAAA QPAACESGGG  180
AALPDAAVAA RAVQLPSAGR RGGGSAAPAA AAAAAPSSSP GPVQDHIIAE RRRREKINQR  240
FIELSTVIPE LKKMDKATIL GDAVKYVRKL QEKVKTLEED GAHSAGGSSS MVQSAVLVKK  300
PCHLQPEDEA IMASGGGGDG GQLPEIEARL SEKSVLVRIH CRNARGLLVR VISEVEKMHL  360
SITHTNVMPF PASTAIITIT AKVEEGFIAT VDEIVRSINS VLHQHYSSSS EETRG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234ERRRRE
2230235RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G401700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643402e-82BT064340.1 Zea mays full-length cDNA clone ZM_BFc0160K20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963288.10.0transcription factor MYC3 isoform X1
TrEMBLK3Z6K20.0K3Z6K2_SETIT; Uncharacterized protein
STRINGSi022171m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-40bHLH family protein