PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G394900.2.p

Common Name

LOC101783892, SETIT_023231mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NF-YA

Protein Properties

Length: 214aa MW: 23395.7 Da PI: 7.5311

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G394900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.1	1.2e-32	107	163	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl k+rkpylheSRh+hAl+R+Rg gGrF Seita.3G394900.2.p 107 EEPVYVNAKQYNAILRRRQSRAKAESERKL-VKGRKPYLHESRHQHALKRARGAGGRF 163 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.0E-35	105	166	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.53	106	166	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.5E-27	108	163	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-23	109	131	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	111	131	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-23	140	163	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MTSVVHSVSG DHRAEDQHQQ QKQAEPEDQQ EAPVTSSDSQ PTVGTPSDYV APYAPHDMGH 60 AMGQYAYPNI DPYYGSLYAA YGGQPMMHPP LVGMHPTGLP LPTDAIEEPV YVNAKQYNAI 120 LRRRQSRAKA ESERKLVKGR KPYLHESRHQ HALKRARGAG GRFLNSKSDE KEENSDSSHK 180 EKQNGVVPHK SGQPSTPPSP NGASSANRAD SHE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-21	106	188	1	77	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G394900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969919	0.0	EU969919.1 Zea mays clone 337251 nuclear transcription factor Y subunit A-7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963231.1	1e-155	nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	2e-46	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	K3Z9K5	1e-154	K3Z9K5_SETIT; Uncharacterized protein
STRING	Si023231m	1e-155	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-39	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Seita.3G394900.2.p
Entrez Gene	101783892

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]