PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G394000.1.p
Common NameLOC101780785, SETIT_021157mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 898aa    MW: 98857.8 Da    PI: 5.9398
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G394000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.6e-23129230199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F  
  Seita.3G394000.1.p 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIFI- 216
                         99*****************************85545444..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Seita.3G394000.1.p 217 -WNDNNQLLLGIRRA 230
                         .7777778***9997 PP
2Auxin_resp1187.9e-39255338183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+ rWpnS+Wrs+k
  Seita.3G394000.1.p 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSERWPNSHWRSVK 338
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.29E-47117258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-42121244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-21128229No hitNo description
PROSITE profilePS5086312.506129231IPR003340B3 DNA binding domain
PfamPF023621.8E-21129230IPR003340B3 DNA binding domain
SMARTSM010191.0E-24129231IPR003340B3 DNA binding domain
PfamPF065073.1E-34255338IPR010525Auxin response factor
PfamPF023091.3E-7760848IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-7762838No hitNo description
PROSITE profilePS5174523.182763847IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MNLSPSKMPE PSPESDGEQR CLNSELWHAC AGPLVSLPMV GSRVVYFPQG HSEQVAASTN  60
KEVDAQIPNY PNLPPQLICQ LHNVTMHADA ETEEVYAQMT LQPLSPEEQK EPFLPIELGA  120
GSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPVQELI ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSIIFIWNDN NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDSERWP NSHWRSVKVG WDESTAGDKQ PRVSLWEIEP  360
LTTFPMYPTA FPLRLKRPWA SGLPMFNGGR SDEFARYSSL MWLRDGNRGA QSLNFQGFGV  420
SPWLQPRIDY PLLGLKPDTY QQMAAAALEE IRGGDHLKQT SSLLPVQQAQ NLNGGLDPLY  480
GNPVLQQMQF QSQQPPLQAV QQGYGQNTGN SGFLQSQLQQ LQLQKQQESA PQQQQQTQQV  540
LQQQSHQDMQ QHLSSNCHDI TNVASSMSEA GSASQSQSSL LPVSSFYQQN MFEGNSSPGL  600
HLQNSFQNFS SQEASNLLNL PRSGQLMASE GWPSKRLAVE PLANLEAQSV QHKLEKVSHQ  660
SNVSHISGTL APLSARDGSS AQALGTNVQS HLLSSSFAIH DGMTTVRSGG VGSGTDAITI  720
ASLRYSDVNL LPENSLATSS CLGESGTFNS LDDVCGVNPS QGGTFVKVYK SGSLGRSLDI  780
TRFSSYYELR SELERLFGLE GQLEDPVRSG WQLVFVDREN DILLVGDDPW QEFVNSVWCI  840
KILSPQDVQQ MVRGGDDLLS TPGATMLQSS VACDDYSAGH SMQNLTGSIA PVVPLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1642235951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G394000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279630.0KJ727963.1 Zea mays clone pUT6075 ARF transcription factor (ARF34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963222.10.0auxin response factor 25
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLK3Z3N90.0K3Z3N9_SETIT; Auxin response factor
STRINGSi021157m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]