PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G390100.1.p | ||||||||
Common Name | SETIT_024641mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YA | ||||||||
Protein Properties | Length: 260aa MW: 28379 Da PI: 10.3976 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 60.9 | 3.8e-19 | 141 | 190 | 8 | 58 |
CBFB_NFYA 8 aKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 aKQ+++I R +Rak e+ ++l k+rkpyl eSRh hAl R+RgsgGrF Seita.3G390100.1.p 141 AKQFEGIFHWRRARAKTERVNRL-VKARKPYLQESRHLHALCRARGSGGRF 190 8**********************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.6E-20 | 132 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 24.273 | 133 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.6E-12 | 136 | 158 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.6E-17 | 141 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.6E-12 | 167 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAFRNRARGG GRRRGMVRVD GPRAGQAAEG AWHAAADQEG GGACAGHLPA AAIWLLRRRR 60 RKHPASLVDE EEGGRRLEAA SRPASMVVSS SLAIVCFACK GEKGSEHSAT VALQPPFAVY 120 NGRFGPGLGQ SMVCADTTDH AKQFEGIFHW RRARAKTERV NRLVKARKPY LQESRHLHAL 180 CRARGSGGRF LNTKKIQQSD LGNLSSVSSL SGSEVSSIYD HEDVDHYHSF HHLYIPFTHS 240 RASWTWPAAS EGCCDLLRA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G390100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963196.1 | 1e-50 | nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_022680516.1 | 1e-50 | nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | K3ZDK3 | 0.0 | K3ZDK3_SETIT; Uncharacterized protein | ||||
STRING | Si024641m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17590.4 | 1e-20 | nuclear factor Y, subunit A8 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G390100.1.p |