PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G390000.2.p
Common NameLOC101768371, SETIT_022607mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 335aa    MW: 35818.4 Da    PI: 9.2537
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G390000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.72.6e-30170226158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         ++p+YVNaKQy++I++RR +Rak+e+e++l  k+rkpylheSRh hAlrR+RgsgGrF
  Seita.3G390000.2.p 170 EAPIYVNAKQYEGIIRRRRARAKAERENRL-VKARKPYLHESRHLHALRRARGSGGRF 226
                         57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-34168229IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.614169229IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-27172226IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-22172194IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860174194IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-22203226IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMSFRSHEGF GQVPAGAISN GGASLPWWAP APQLLLYGEA LGQGKVAPEA TATAACREAR  60
FQVVPGAQAL LDPPVPPAPK ASAAERGSLP EVLKFSVAQG KGEKGAEYSA TVALPSPFAI  120
YNGRFELGLG QSMVSANNPY ADQHYGLLSP YPVGATNGGC TRIPLNMPTE APIYVNAKQY  180
EGIIRRRRAR AKAERENRLV KARKPYLHES RHLHALRRAR GSGGRFLNTK KESNGKDAGG  240
DGKAMISKPL MRQVASPSSE IQQSDLGNPS SVSSLSGSEV SSIYDHEDVD HYHSFDHLRT  300
PFFTPLPSIM DGEHGGNPFK WPTASEGCCD LLRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-17169234166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G390000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963196.10.0nuclear transcription factor Y subunit A-10
RefseqXP_022680516.10.0nuclear transcription factor Y subunit A-10
TrEMBLK3Z7T70.0K3Z7T7_SETIT; Uncharacterized protein
STRINGSi022607m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.31e-27nuclear factor Y, subunit A10