PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G386400.1.p | ||||||||
Common Name | LOC101786434, SETIT_023407mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LSD | ||||||||
Protein Properties | Length: 180aa MW: 18848.1 Da PI: 8.5976 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.4 | 2e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL YPrGApsV+Ca+C V Seita.3G386400.1.p 7 CHGCRRLLLYPRGAPSVCCAVCRVV 31 **********************987 PP | |||||||
2 | zf-LSD1 | 38.2 | 2.3e-12 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y+ +A+ VRC++CdtV Seita.3G386400.1.p 46 CGGCQTLLMYTCNATTVRCSCCDTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 47.9 | 2.1e-15 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C+t+L+YP+GApsV+Ca+C+++ Seita.3G386400.1.p 84 CGRCQTVLMYPYGAPSVKCAICNFI 108 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 7.6E-11 | 4 | 31 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.2E-10 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.3E-11 | 44 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-9 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.3E-11 | 81 | 111 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.0E-14 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MQSQIVCHGC RRLLLYPRGA PSVCCAVCRV VSNVPPPGME MARLICGGCQ TLLMYTCNAT 60 TVRCSCCDTV NLVRPVSSIA HVNCGRCQTV LMYPYGAPSV KCAICNFITS VGGHQVPTVR 120 PLPPTLPASS GNSYNIPSTS APMSQSQNVT VVVENPMTVD DKGKLVSNVV VGVTTGGKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G386400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF314699 | 0.0 | KF314699.1 Setaria italica clone Si18S 18S ribosomal RNA gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963154.1 | 1e-125 | protein LOL2 isoform X1 | ||||
Swissprot | Q2QMB3 | 6e-94 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | K3ZA36 | 1e-124 | K3ZA36_SETIT; Uncharacterized protein | ||||
STRING | Si023407m | 1e-125 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 5e-53 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G386400.1.p |
Entrez Gene | 101786434 |
Publications ? help Back to Top | |||
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