PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G384900.1.p | ||||||||
Common Name | LOC101780784, SETIT_022196mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 410aa MW: 43737 Da PI: 5.1638 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.1 | 2.7e-17 | 261 | 307 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Seita.3G384900.1.p 261 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 307 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-21 | 254 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.49E-19 | 254 | 311 | No hit | No description |
SuperFamily | SSF47459 | 5.89E-21 | 255 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.559 | 257 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-14 | 261 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-19 | 263 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MNQYGPDWSS SMGDAFAELN GDDDGLIELM WCNGHVVMQS QAPRKPPRPE KAPAAAVQDD 60 EAAAWFQYPV AAEDPLERDL FTELFGEAQA ADDAGSGRAC KEEAECAGDA APQSSGLMPP 120 PRPREKACFG DLGDVEDGTA ATATATEAGE SSMLTIGSSF CGSNHVQTPR ARAPFDGAPP 180 PGGAGKAGGK ARDAATVTSS SMRPTSCTTK AGQPSASANR SGKRKQSDST DAEDAEFESA 240 DVTCEPAQKL TTAKRRRAAE VHNLSERRRR DRINEKMKAL QELIPHCNKT DKASMLDEAI 300 EYLKSLQLQL QMMWMGGGMA AAAAAPVMFP AGVHQYMQRM VAPPHVASMP RMTFMAPPAV 360 QSPPVADPYA RYLAVDHLQP PPSTMHYLQG MGFYQQQQQS PALPAPPTR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 254 | 269 | RRRAAEVHNLSERRRR |
2 | 265 | 270 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G384900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055876 | 4e-80 | BT055876.1 Zea mays full-length cDNA clone ZM_BFc0002C15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963135.1 | 0.0 | transcription factor PIF4 isoform X1 | ||||
Refseq | XP_004963136.1 | 0.0 | transcription factor PIF4 isoform X1 | ||||
Refseq | XP_022680515.1 | 0.0 | transcription factor PIF4 isoform X1 | ||||
TrEMBL | K3Z6M7 | 0.0 | K3Z6M7_SETIT; Uncharacterized protein | ||||
STRING | Si022196m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3107 | 36 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 5e-29 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G384900.1.p |
Entrez Gene | 101780784 |