PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G377300.1.p
Common NameSETIT_024602mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 324aa    MW: 34281.1 Da    PI: 9.1713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G377300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.8e-15156203355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +ah+  E+rRR++iN+++ +L++l+P +      K + a++L ++++Y+ksLq
  Seita.3G377300.1.p 156 EAHKLTEKRRRHKINERLRTLQQLVPGC-----DKSNQASTLDQTIQYMKSLQ 203
                         58*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-17151210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.929153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.37E-14156207No hitNo description
Gene3DG3DSA:4.10.280.109.5E-18156210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-12156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-14159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MNYPGHDAAA DPWCFAAGDY TSSSFADMVP GYSTDDPFEL VWGQGGGAGA PGSTTTMQPA  60
AESCRLWSPP PEVPFDPPSE DEMAAWLCAI VKGEELVAFN AAGRDVPPVP KRSSGSSTTT  120
TSGTKEKLPK TEVMGTKQEI RKPPAVRESS RSHHGEAHKL TEKRRRHKIN ERLRTLQQLV  180
PGCDKSNQAS TLDQTIQYMK SLQHHVQEMS GVGPARPAAV PVVPPQYAPP MAPVAVPTMM  240
PAAPMVLAPV PTTMVPFGAM VQLPHYPAAV VPVMMPAAAA HLYPAAAPVR AAVAPGSAES  300
SVTRRHGSSR SKGKCGSSLR KKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309321RSKGKCGSSLRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G377300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699853.10.0transcription factor APG isoform X1
TrEMBLK3ZDG60.0K3ZDG6_SETIT; Uncharacterized protein
STRINGSi024602m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-17phytochrome interacting factor 3