PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G376700.1.p
Common NameLOC101761071, SETIT_022461mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 359aa    MW: 38435.7 Da    PI: 10.6794
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G376700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31292349359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Seita.3G376700.1.p 292 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 349
                         9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-18243288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.2E-34278349IPR003657WRKY domain
PROSITE profilePS5081130.148285348IPR003657WRKY domain
SuperFamilySSF1182905.23E-27288349IPR003657WRKY domain
SMARTSM007744.4E-38290350IPR003657WRKY domain
PfamPF031064.9E-27292348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEEVEVANRA AVESCHRVLS LLSQSQQQDP ALLKSIASET GEACAKFRKV TALLANGGSS  60
GHARGRFYRR GRPSGFLTLK GILGSSSDTP SELMPSAAAA APSPSTSYAQ LRARIGGVPD  120
PRGLDLASSS SKSGAHPYGA PKMVQPLSVQ FQIGNVAHRY PFHQQPSRQK LQAEMFKRSN  180
SGISLKFDSP SPSGGAGTMS SARSFMSSLS MDGSVASLDG KRPFHLVGAP VASDPADAHR  240
APKRRCMGRG QDGTGKCATT GRCHCSKRRK LRIKRSIKVP AISNKIADIP PDEYSWRKYG  300
QKPIKGSPHP RGYYKCSSVR GCPARKHVER CVDDPAMLIV TYEGEHNHTR LPAQSAQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20278353276WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244RAPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G376700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700477.10.0protein WRKY1
TrEMBLK3Z7E10.0K3Z7E1_SETIT; Uncharacterized protein
STRINGSi022461m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-64WRKY DNA-binding protein 21