PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G368800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 444aa    MW: 47202.9 Da    PI: 4.3344
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G368800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-19100149255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Seita.3G368800.1.p 100 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 149
                         789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-3099156No hitNo description
PROSITE profilePS5103219.599100157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-27100156IPR001471AP2/ERF domain
PfamPF008471.2E-13100149IPR001471AP2/ERF domain
SMARTSM003804.3E-36100163IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-19100157IPR016177DNA-binding domain
PRINTSPR003676.9E-8101112IPR001471AP2/ERF domain
PRINTSPR003676.9E-8123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MNNQRKQQRD LIFSCLHCLL SSPINSTDLA RHRSISPLLT PSLARSTASM ARKRKASDSV  60
EFEDGNDVLI NSPPPLPSTD AWASVAAAAA AAQQQRGRKR FVGVRQRPSG RWVAEIKDTI  120
QKIRVWLGTF DTAEEAARAY DEAACLLRGS NTRTNFWPRP TPAAAAAHPV QVQVQVQPPL  180
AVASSSPAPA LPSKVTNLLL LRLRARNQQL FSAATAAQHE AALLPGPLCA DEPYGGGGGE  240
ECAFHVDDFL SYDSGSSDGN SSQEMEDEEE EEEEEELDFQ FMDEHAAGCE GGLCSPFDVV  300
AAELGGAVGA ADGGEPESES AVQELMRRRM DYERKISASL YALSGVSECL RMRHGAGVGD  360
QLTGLREACR KKQRDAAQQQ QQEEEAPSPE AAEDGNAAQE ECSGGSGAPE AASSSSSSEA  420
SDGDGDGDGD ELLWSSLDLA PIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-121001561471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G368800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126203e-93CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964146.10.0uncharacterized protein LOC101780522
TrEMBLA0A368QMN80.0A0A368QMN8_SETIT; Uncharacterized protein
STRINGSi024417m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-22related to AP2 11