PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G345600.1.p

Common Name

SETIT_025174mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 177aa MW: 18282 Da PI: 10.6168

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G345600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.00039	34	75	12	54
HHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+ + s f+eL +lP+ + ++++ s ei+ A +++L Seita.3G345600.1.p 34 HRRTVSSLFAELGAMLPNdL--PTNRPASREEIVDAAAARVRML 75 58999***********76..69999*****9998877776 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAGGGWLPLD LSLATSGAGT SASAAERRTG TRAHRRTVSS LFAELGAMLP NDLPTNRPAS 60 REEIVDAAAA RVRMLEEAAA VLETYRAVRG PPCPRPRPEV AVAVATVCFS ARLPAPTRPS 120 ALTRVLEAFH RRGVEVLVAT VARHGHGGGA AVVTVTATAA PSEVLELIRA DIAAIH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G345600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680863.1	1e-118	uncharacterized protein LOC111256704
TrEMBL	K3ZF25	1e-117	K3ZF25_SETIT; Uncharacterized protein
STRING	Si025174m	1e-117	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9141	19	31

Link Out ? help Back to Top
Phytozome	Seita.3G345600.1.p