PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G327800.1.p
Common NameSETIT_022683mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 338aa    MW: 34168.2 Da    PI: 8.8753
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G327800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.94.7e-38106163562
              zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s
  Seita.3G327800.1.p 106 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 163
                         679***************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-3288159IPR003851Zinc finger, Dof-type
PfamPF027011.2E-31107161IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.385107161IPR003851Zinc finger, Dof-type
PROSITE patternPS013610109145IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVFSSLPIFL DPPNWGQMQM QQQQPPLQCL LGGGGGGSDH HHLMPPPSGL APLPGGPADT  60
AASAPAGGGS STSMQAAAGA AAQPRPVVSM AERARLARVP LPEPGTLRCP RCDSTNTKFC  120
YFNNYSLSQP RHFCKACRRY WTRGGALRNV PVGGGCRRNT KRSSKKSSRG GGAGATAATS  180
SSSTTSTSTT ATTTTATTSA AMAAAEAIAS MQAQLPHLGL PPAAAAAALE ASLEGYHHYL  240
PLQMQPQFLQ QAGLHGYHFA DDGSGVLADG FPRGVVASGL LAQLAAVKME EHGGGGGGGG  300
AVAAHEQPYW AGSNGGGSGW PAEFLSGFSS SSSGNVL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00281DAPTransfer from AT2G28810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G327800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824190.0KC582419.1 Sorghum bicolor dof28 protein (dof28) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962704.10.0dof zinc finger protein DOF2.4
TrEMBLA0A368QNB50.0A0A368QNB5_SETIT; Uncharacterized protein
STRINGSi022683m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.12e-39Dof family protein