PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G301600.1.p | ||||||||
Common Name | LOC101772943, SETIT_024164mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 157aa MW: 17254.4 Da PI: 5.2765 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.1 | 2.2e-08 | 4 | 44 | 9 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 q++fs R n+++ A+ LS +a vavi fs+tg+ + y Seita.3G301600.1.p 4 SQTSFSERTNTLFSIAKDLSQEFGAHVAVIAFSPTGERKAY 44 69**********************************97766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.629 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-8 | 5 | 41 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-9 | 5 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MAQSQTSFSE RTNTLFSIAK DLSQEFGAHV AVIAFSPTGE RKAYGAPTAN SILCNYLPEI 60 HSSSSQALTE IAREATNRVD GMKREVEETV FQAKMERALQ ATAWSKILAA QTSAGKQNCW 120 EVDVEALRAD KFLVFVRALD ALRTDIQRYL DAMESS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G301600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963936.1 | 1e-113 | uncharacterized protein LOC101772943 | ||||
TrEMBL | K3ZC90 | 1e-111 | K3ZC90_SETIT; Uncharacterized protein | ||||
STRING | Si024164m | 1e-112 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7989 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-07 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G301600.1.p |
Entrez Gene | 101772943 |