PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G282000.1.p
Common NameLOC101776857, SETIT_021956mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 470aa    MW: 49859.2 Da    PI: 8.0677
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G282000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33201259260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d+++++i+Y+g Hnh+k
  Seita.3G282000.1.p 201 EDGYNWRKYGQKQVKGSENPRSYYKCTYNSCSMKKKVERSLADGRITQIVYKGAHNHPK 259
                         8********************************************************85 PP
2WRKY106.51.3e-33346404159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg++WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d+++v++tYeg+Hnh+
  Seita.3G282000.1.p 346 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERASHDNRAVITTYEGKHNHD 404
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.659195260IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-28198260IPR003657WRKY domain
SuperFamilySSF1182909.94E-26198260IPR003657WRKY domain
SMARTSM007742.1E-35200259IPR003657WRKY domain
PfamPF031067.0E-25201258IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.2E-37331406IPR003657WRKY domain
SuperFamilySSF1182901.57E-29338406IPR003657WRKY domain
PROSITE profilePS5081138.09341406IPR003657WRKY domain
SMARTSM007742.2E-39346405IPR003657WRKY domain
PfamPF031063.7E-26347404IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MASSTGSLEH GGFTFTPPPF ITSFTELLSG SGDMLGAESQ DRSPRGLFHR GARGGVPKFK  60
SAQPPSLPIS PPPMSPSSYF AIPAGLSPAE LLDSPVLLNS CSNLLASPTT GAIPAQRFDW  120
KQAAELIASQ SQQDETRAPG GFNDFSFHTA GSNAMPTQTA SFPSFKDQQV EAMNKQIVVA  180
ASNKASSGGN NCGGNSNTKL EDGYNWRKYG QKQVKGSENP RSYYKCTYNS CSMKKKVERS  240
LADGRITQIV YKGAHNHPKP LSTRRNSSGA AAAEDQALSG ATPENSSVTF GDDEADNGSH  300
RSDADEPDAK RWKAEDGENE GSSGSGGKPV REPRLVVQTL SDIDILDDGF RWRKYGQKVV  360
KGNPNPRSYY KCTTPGCPVR KHVERASHDN RAVITTYEGK HNHDVPVGRG AASRAAAPPA  420
AAPPAASAGA MILAHQPYTL EMLGSGYGGG YGAAKDEPRD DLFVDSLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37200406177Probable WRKY transcription factor 4
2lex_A2e-37200406177Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G282000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586030.0KU058603.1 UNVERIFIED: Panicum miliaceum WRKY16-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962416.10.0probable WRKY transcription factor 26
SwissprotQ6B6R41e-117WRK24_ORYSI; WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-117WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLK3Z5Y80.0K3Z5Y8_SETIT; Uncharacterized protein
STRINGSi021956m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.11e-96WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]