PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G280400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21217.4 Da    PI: 10.9132
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G280400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.36.4e-212266347
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                        ie+  +r vtfskR+ g+lKKA+ELS LC+a+va i+fs+ gk +
  Seita.3G280400.1.p 22 IEDPARRMVTFSKRKSGLLKKASELSLLCGARVAAIVFSQAGKPF 66
                        999**************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.6231272IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-301271IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-251381IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-191434IPR002100Transcription factor, MADS-box
PfamPF003193.3E-232268IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-193449IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-194970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVAPRGTGRT SQGRRRIEIA YIEDPARRMV TFSKRKSGLL KKASELSLLC GARVAAIVFS  60
QAGKPFAFGS PSVDHVLRLC APLPAGDKDE DSLGIGFTGD AIGGGDREVV EATARRKEAA  120
TARVAEEAAR MSYIGKKVLR AAAGRFWWEA DVEALGAEEL REFARALRRL RDNVRRRADK  180
LPLAPVSQPT TTLLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A4e-161377165Myocyte-specific enhancer factor 2A
3kov_B4e-161377165Myocyte-specific enhancer factor 2A
3kov_I4e-161377165Myocyte-specific enhancer factor 2A
3kov_J4e-161377165Myocyte-specific enhancer factor 2A
3mu6_A3e-161377165Myocyte-specific enhancer factor 2A
3mu6_B3e-161377165Myocyte-specific enhancer factor 2A
3mu6_C3e-161377165Myocyte-specific enhancer factor 2A
3mu6_D3e-161377165Myocyte-specific enhancer factor 2A
3p57_A4e-161377165Myocyte-specific enhancer factor 2A
3p57_B4e-161377165Myocyte-specific enhancer factor 2A
3p57_C4e-161377165Myocyte-specific enhancer factor 2A
3p57_D4e-161377165Myocyte-specific enhancer factor 2A
3p57_I4e-161377165Myocyte-specific enhancer factor 2A
3p57_J4e-161377165Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G280400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962402.11e-137agamous-like MADS-box protein AGL29
TrEMBLA0A368QJN01e-135A0A368QJN0_SETIT; Uncharacterized protein
STRINGSi023118m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.28e-18AGAMOUS-like 71