PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G278400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 359aa MW: 36740.1 Da PI: 6.3129 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.4 | 2.2e-20 | 32 | 77 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd+ll +av+++G+++W++I+++++ gR++k+c++rw + Seita.3G278400.1.p 32 KGSWTPEEDDLLRRAVARHGPRNWSLISAEIP-GRSGKSCRLRWCNQ 77 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 59.9 | 5.7e-19 | 84 | 128 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eEd ++v a++qlG++ W+tIar++ gRt++++k++w++ Seita.3G278400.1.p 84 RRPFTPEEDAIIVAAHAQLGNK-WATIARMLH-GRTDNSVKNHWNST 128 679*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.077 | 27 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.47E-31 | 29 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-18 | 31 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-20 | 32 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 33 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.22E-17 | 34 | 76 | No hit | No description |
SMART | SM00717 | 1.9E-15 | 83 | 131 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 84 | 128 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.397 | 84 | 133 | IPR017930 | Myb domain |
CDD | cd00167 | 8.51E-12 | 86 | 129 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 86 | 131 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MAAPSGGAGG VDGGGGPAGS GSGGGEGNGR VKGSWTPEED DLLRRAVARH GPRNWSLISA 60 EIPGRSGKSC RLRWCNQLSP GVERRPFTPE EDAIIVAAHA QLGNKWATIA RMLHGRTDNS 120 VKNHWNSTLR RQRRAAAAAA NAGCAALPLC PLAAAATAAS GPPLALRHLL LDPKESSPSP 180 ASAVPFQPLD LKRGDDGGDD EEDEEEDDED GSSEDSVLMP PPKKRPCIGV GPGQSHPSLC 240 AAKKPEHTKP LPPPTPAAPA EPVTSLTLSL PGVGGGSGAV PEAPAPQGAV SAAATSLDGV 300 AKMRAKLEQE WPWLQPVIRQ MICEEVQRHL QGAYVPCSLV ASPAAGGADG RAAASSQD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-36 | 31 | 132 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-36 | 31 | 132 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G278400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969854 | 1e-116 | EU969854.1 Zea mays clone 336503 mRNA sequence. | |||
GenBank | KJ727659 | 1e-116 | KJ727659.1 Zea mays clone pUT5586 MYB transcription factor (MYB119) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963854.1 | 0.0 | transcription factor MYB44 | ||||
TrEMBL | A0A368QJU9 | 0.0 | A0A368QJU9_SETIT; Uncharacterized protein | ||||
STRING | Si024344m | 1e-171 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-50 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G278400.1.p |