PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G278000.1.p | ||||||||
Common Name | SETIT_024928mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 98aa MW: 10845.2 Da PI: 4.1943 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.6 | 1.4e-07 | 4 | 41 | 9 | 46 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 q+ fs R ++++ A+ LS da +a+i fs+tg+ Seita.3G278000.1.p 4 SQTNFSERTETLFSMAKDLSQEFDAHIAIIAFSPTGEP 41 699*********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 8.521 | 1 | 40 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-7 | 5 | 43 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-8 | 5 | 43 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MAQSQTNFSE RTETLFSMAK DLSQEFDAHI AIIAFSPTGE PKTSTGKHNW WEVDVEALGA 60 DELPVFVRAL EVLRTDVQHH LDAIILEGED ATLILFC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G278000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980582.1 | 4e-37 | uncharacterized protein LOC101765376 | ||||
TrEMBL | K3ZED4 | 4e-65 | K3ZED4_SETIT; Uncharacterized protein | ||||
STRING | Si024928m | 7e-66 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7989 | 5 | 12 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G278000.1.p |