PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G269200.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GeBP

Protein Properties

Length: 496aa MW: 53686.4 Da PI: 10.6838

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G269200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	94.6	1e-29	246	343	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 +++r+ws eDei++L +l++++ak+g+ + +d+ ++++++++++ +++s++ql++K+rrLK+K+k ++a++g++p++ ++h+++++e Seita.3G269200.1.p 246 RPSRVWSPEDEITILSALVEYRAKKGQlpASIQDTGKVHSQISGQLTANASTTQLSDKVRRLKHKYKLLFTRARNGRDPDLPTQHEHDVYE 336 678**********************777888****************************************************** PP DUF573 91 lskkiWg 97 lskk+Wg Seita.3G269200.1.p 337 LSKKVWG 343 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.9E-28	248	343	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
SIEGRKRRGC RLSTHSDASD GGAGDVRYSR RRRRRNSPSP IPSRSPSRSR SRSRSKTPPP 60 NLRPNAAALS STPTSAGADF AAASDSDADA GGGRGRVSSP RRRDRKGAPR DRLDSDADAD 120 ASAGGRAPSP RRRRKRSPSF HFDSDADAGG RVPSPRRNRE RTPRLHSDSD SDNSAAAAGS 180 EDDGAGAGDA SSLPRARRSS RIETSNIKPV STRPMEAPRR TPAGSSQRRS KRRHSSRRAS 240 PEHQKRPSRV WSPEDEITIL SALVEYRAKK GQLPASIQDT GKVHSQISGQ LTANASTTQL 300 SDKVRRLKHK YKLLFTRARN GRDPDLPTQH EHDVYELSKK VWGFKSGDIL GGSHAYEDTG 360 DAESNEEQEI EESDDAMENG WEHHERPSKK PKAFRFENGN GNALAAVGRA SHGNGSGRDD 420 AEKGKQMYPY LWEAVAELSK EHPSGPIFRK AFGVLEKSKA QATSYGGEAA EVQNVRDKAA 480 AASDGPDEGD NADGA*

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

SIEGRKRRGC RLSTHSDASD GGAGDVRYSR RRRRRNSPSP IPSRSPSRSR SRSRSKTPPP  60
NLRPNAAALS STPTSAGADF AAASDSDADA GGGRGRVSSP RRRDRKGAPR DRLDSDADAD  120
ASAGGRAPSP RRRRKRSPSF HFDSDADAGG RVPSPRRNRE RTPRLHSDSD SDNSAAAAGS  180
EDDGAGAGDA SSLPRARRSS RIETSNIKPV STRPMEAPRR TPAGSSQRRS KRRHSSRRAS  240
PEHQKRPSRV WSPEDEITIL SALVEYRAKK GQLPASIQDT GKVHSQISGQ LTANASTTQL  300
SDKVRRLKHK YKLLFTRARN GRDPDLPTQH EHDVYELSKK VWGFKSGDIL GGSHAYEDTG  360
DAESNEEQEI EESDDAMENG WEHHERPSKK PKAFRFENGN GNALAAVGRA SHGNGSGRDD  420
AEKGKQMYPY LWEAVAELSK EHPSGPIFRK AFGVLEKSKA QATSYGGEAA EVQNVRDKAA  480
AASDGPDEGD NADGA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	11	GRKRRGCRL
2	26	34	RYSRRRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G269200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012702606.1	0.0	STOREKEEPER protein
TrEMBL	A0A368QJY9	0.0	A0A368QJY9_SETIT; Uncharacterized protein (Fragment)
STRING	Si013598m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2671	35	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	1e-13	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Seita.3G269200.1.p