PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G266700.1.p
Common NameSETIT_025289mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 418aa    MW: 44771.6 Da    PI: 6.2929
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G266700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS92.28e-29792326169
                GRAS   6 lecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                          +c+ ++++g+ ++++a L+ +s+l  as + dp+qR+a+ f+eAL +  a  + + ++a        +   ++ aa++ f  ++P+l ++
  Seita.3G266700.1.p  79 QHCVAVLDEGNIAAVNADLQAMSHLalASANSDPTQRVAFAFAEALGRATAP-GRSAARA--------SVCRRRHAARRCFDALCPFLHVT 160
                         47999*******************98899999***************99888.3333322........335566789999*********** PP

                GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfA 169
                           +aNq+I+ a++ e+ vH++D++   + QW+ Ll+ +a +Rpeg+p lR+ +v++    +   l++t+  L++ A
  Seita.3G266700.1.p 161 ASAANQTIVTAIAAEKNVHVVDLGGASPNQWLDLLRLFAaARPEGAPVLRLSVVSE----QDAFLSRTAGLLTQEA 232
                         **************************************989***************....5555555555555554 PP
2GRAS93.33.8e-29247410215374
                GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl..eaklpreseerikvErellgreivnvvacega 303
                         + ++++++  d++L+++ +lsPk++ ++eqeadhn++++ +r+++a++yy+alf+ l    ++pre  +r+ vEr ll++ei+++va + +
  Seita.3G266700.1.p 247 AGPHQITK-ADALLRVLCDLSPKLMLLTEQEADHNGANLWDRVSNAFNYYAALFNDLepGGGAPREWVDRAAVERLLLQEEIMDIVARASR 336
                         44555666.99**********************************************5555689999********************8776 PP

                GRAS 304 errerhetlekWrerleeaGFkpvplse.kaakqaklllrkvksdg...yrveeesgslv.lgWkdrpLvsvSaWr 374
                           rerhe +++W +r + aGF+++p+ + +  ++a l   + + dg   y v +e++s++  + +  p++sv+aWr
  Seita.3G266700.1.p 337 --RERHEVMKSWVQRTGVAGFNTAPVMSyDQFADAGLQALQLAADGtlrYWVRNEDASIIvVYSRMTPIFSVTAWR 410
                         ..5********************99755145555555544444666677999999998883555678********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.24248385IPR005202Transcription factor GRAS
PfamPF035142.8E-2679232IPR005202Transcription factor GRAS
PfamPF035141.3E-26247410IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSLANSNNKG KAVVKEEVPS PTAMEGVPSD NVPAAPLNSS GRDDKSKSQG HLGSSVHEAG  60
SSSLAPSMPE PSMTAELTQH CVAVLDEGNI AAVNADLQAM SHLALASANS DPTQRVAFAF  120
AEALGRATAP GRSAARASVC RRRHAARRCF DALCPFLHVT ASAANQTIVT AIAAEKNVHV  180
VDLGGASPNQ WLDLLRLFAA ARPEGAPVLR LSVVSEQDAF LSRTAGLLTQ EAIHRLIADE  240
TSVELPAGPH QITKADALLR VLCDLSPKLM LLTEQEADHN GANLWDRVSN AFNYYAALFN  300
DLEPGGGAPR EWVDRAAVER LLLQEEIMDI VARASRRERH EVMKSWVQRT GVAGFNTAPV  360
MSYDQFADAG LQALQLAADG TLRYWVRNED ASIIVVYSRM TPIFSVTAWR PAEKNGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-168041125380Protein SCARECROW
5b3h_A4e-168041124379Protein SCARECROW
5b3h_D4e-168041124379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G266700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963818.10.0scarecrow-like protein 3
TrEMBLK3ZFD90.0K3ZFD9_SETIT; Uncharacterized protein
STRINGSi025289m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-25RGA-like protein 3