PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G259600.1.p

Common Name

LOC101769453, SETIT_022781mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

SRS

Protein Properties

Length: 304aa MW: 30571.8 Da PI: 8.7242

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G259600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	193	1e-59	88	257	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstkl 91 +sg+a+C+dCGnqakk+Cah+RCRtCC+srgf+C+thv+stWvpaa+rrer q + + + ++ aa+k++r +++++++ s+t++ Seita.3G259600.1.p 88 GSGAATCHDCGNQAKKGCAHNRCRTCCNSRGFECETHVRSTWVPAARRRERLQLAGGGAGASPPPTSPAAAKKPRLAcQTTTATTNSRTST 178 57889********************************************9999888877777778888888887745666777788999 PP DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvddg......eeelaYqtavsigGhvfkGiLydqGlee 154 s+a+++++++tss lP++v+ +avfrcvrv+svddg e+aYq+av+i+Gh+f+G+Lyd+G+++ Seita.3G259600.1.p 179 SNATTPRSFDTSSshqdasfkdnLPRQVRGPAVFRCVRVTSVDDGgggcggTGEVAYQAAVTINGHLFRGLLYDHGADT 257 9******999**************************5233333679********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-52	91	256	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.6E-25	93	135	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.2E-20	202	254	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MFVVAPAGSL HHQRAADDPV FPLIAAAQRT LVDADAGSGK PPASSAAAAI QFWHPEPSQA 60 AAGADGSHGK KSLAMLDQGR GGAGSGSGSG AATCHDCGNQ AKKGCAHNRC RTCCNSRGFE 120 CETHVRSTWV PAARRRERLQ LAGGGAGASP PPTSPAAAKK PRLACQTTTA TTNSRTSTSN 180 ATTPRSFDTS SSHQDASFKD NLPRQVRGPA VFRCVRVTSV DDGGGGCGGT GEVAYQAAVT 240 INGHLFRGLL YDHGADTDGR AAAAVQLGTS DLHLGSASAA APNLYSGASA PLILGGLGYG 300 NTP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G259600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU959412	1e-161	EU959412.1 Zea mays clone 218086 LRP1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962238.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_022680709.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	2e-46	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	K3Z8B1	0.0	K3Z8B1_SETIT; Uncharacterized protein
STRING	Si022781m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-31	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Seita.3G259600.1.p
Entrez Gene	101769453

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]