PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G240500.1.p | ||||||||
Common Name | LOC101772396, SETIT_024114mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 279aa MW: 27914.3 Da PI: 7.4999 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.8 | 3.7e-43 | 41 | 138 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC++dCv+apyfp e+p+kf vh++FGasnv+k+l++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq++l+q++ Seita.3G240500.1.p 41 PCAACKFLRRKCQPDCVFAPYFPPENPQKFVHVHRVFGASNVTKILNELHPCQREDAVNSLAYEADMRLRDPVYGCVGVISILQHRLRQVQ 131 7****************************************************************************************** PP DUF260 92 aelallk 98 +ela++ Seita.3G240500.1.p 132 QELARAS 138 ***9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.965 | 40 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-43 | 41 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MAASSASSVP PASTGSVVTV VSPSTGGGSI SGSLGAGAGS PCAACKFLRR KCQPDCVFAP 60 YFPPENPQKF VHVHRVFGAS NVTKILNELH PCQREDAVNS LAYEADMRLR DPVYGCVGVI 120 SILQHRLRQV QQELARASYE LSKYQAAAEA AAAAAASVAV GSNGAAAAGM ADFVGNPVPN 180 CTQNFINVGH PTAAAAIGGA GFVQHDHFAS VQMLARSYDG EAATARLGMN GGGGGYGFAY 240 SSAMGAGHGV VSGVGQIGGG PFLKSGTAGG DEQPAAAQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-53 | 37 | 144 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-53 | 37 | 144 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G240500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY795560 | 1e-111 | AY795560.1 Triticum aestivum AS2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962077.1 | 0.0 | LOB domain-containing protein 6 | ||||
Refseq | XP_004962078.1 | 0.0 | LOB domain-containing protein 6 | ||||
Refseq | XP_004962079.1 | 0.0 | LOB domain-containing protein 6 | ||||
Refseq | XP_012700131.1 | 0.0 | LOB domain-containing protein 6 | ||||
Swissprot | Q32SG3 | 1e-114 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | K3ZC40 | 0.0 | K3ZC40_SETIT; Uncharacterized protein | ||||
STRING | Si024114m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 3e-51 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G240500.1.p |
Entrez Gene | 101772396 |