PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G238700.1.p
Common NameLOC101765781, SETIT_022103mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 414aa    MW: 43886.6 Da    PI: 8.074
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G238700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.94.2e-49491742128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+++  + kew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +
  Seita.3G238700.1.p  49 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELIAFLDLYRFDPWELPAMAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMI 138
                         79***************************.89***************7767789************************************* PP

                 NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++++ +glkktLvfy+g+apkg++++W+m+eyrl
  Seita.3G238700.1.p 139 RGENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 174
                         **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-5647198IPR003441NAC domain
PROSITE profilePS5100554.68748198IPR003441NAC domain
PfamPF023651.6E-2450174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSRDLEDGQG AIDSAIVAAA GGGEGSIEAA AAGGGGEAAG DTHDNDVVMP GFRFHPTEEE  60
LIEFYLRRKV EGKRFNVELI AFLDLYRFDP WELPAMAVMG GKEWFFYVPR DRKYRNGDRP  120
NRVTASGYWK ATGADRMIRG ENNRPIGLKK TLVFYSGKAP KGVRSSWIMN EYRLPPPAAD  180
ADPLIPKSEI SLCRVYKRSG IDDGHGQSSS STQASSGRRI SSRTGVPTGR HGSSPSSTPL  240
SPTQQLSSFH LLQGECSSAS PPAPIMDQVV TVHSAPPQLL PPPRPCTYAP AATIRSAAAV  300
APQRAQGAAA LASTYSSLFN MAAAATMAGV SRPPIDELST LVGPGQAGYA TLSAATGSHF  360
LPLMPAPPPI PQMTPLGALP MVQPPPSVTD KLSWDWNPVP DTAARDYDAS GFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-545019919166NO APICAL MERISTEM PROTEIN
1ut4_B5e-545019919166NO APICAL MERISTEM PROTEIN
1ut7_A5e-545019919166NO APICAL MERISTEM PROTEIN
1ut7_B5e-545019919166NO APICAL MERISTEM PROTEIN
4dul_A5e-545019919166NAC domain-containing protein 19
4dul_B5e-545019919166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G238700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0604780.0BT060478.1 Zea mays full-length cDNA clone ZM_BFb0004F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962060.10.0NAC domain-containing protein 35
TrEMBLK3Z6L90.0K3Z6L9_SETIT; Uncharacterized protein
STRINGSi022103m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.13e-91NAC domain containing protein 35