PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G225400.1.p

Common Name

LOC101784553, SETIT_022966mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 267aa MW: 29271.3 Da PI: 4.9699

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G225400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	131.1	8.1e-41	5	136	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 l+pGfrF Pt+eel+++yL++k++g + ++e+vi+ +d++ ++Pw+Lp+ +++++ + w++F++r++++a+g r++r+t sgyWka Seita.3G225400.1.p 5 LAPGFRFYPTEEELLCFYLRNKLDGVRsGDIERVIPVADVCALDPWQLPEayrgEFSGNGEPWFYFCPRQEREARGGRPSRTTPSGYWKAA 95 579*******************9986677788***********6456655568889************************* PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 g+ v++++g+ +g+kkt+vfy+grap g kt+W ++ey+ Seita.3G225400.1.p 96 GTPGLVYAADGRPIGTKKTMVFYRGRAPAGAKTEWKLNEYK 136 **************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-45	4	173	IPR003441	NAC domain
PROSITE profile	PS51005	46.423	5	173	IPR003441	NAC domain
Pfam	PF02365	1.3E-21	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MTDQLAPGFR FYPTEEELLC FYLRNKLDGV RSGDIERVIP VADVCALDPW QLPEAYRGEF 60 SGNGEPWFYF CPRQEREARG GRPSRTTPSG YWKAAGTPGL VYAADGRPIG TKKTMVFYRG 120 RAPAGAKTEW KLNEYKSLEE EDEYAAAAHA AVPAPSFALQ TRSEFTLCRL YTKSGCPRQF 180 DRRPGAAAAA GGGSENPAAA ALANGEETGR KRRRAAPSED TSSSDGGGDP STQQRLRQRG 240 ADEGPNDDMV NLSELLDYWF DTENSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-30	5	173	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-30	5	173	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-30	5	173	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-30	5	173	17	165	NO APICAL MERISTEM PROTEIN
4dul_A	7e-30	5	173	17	165	NAC domain-containing protein 19
4dul_B	7e-30	5	173	17	165	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	214	GRKRRRA
2	209	213	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G225400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961932.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-64	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	K3Z8U6	0.0	K3Z8U6_SETIT; Uncharacterized protein
STRING	Si022966m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-65	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Seita.3G225400.1.p
Entrez Gene	101784553

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]