PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G223400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 167aa    MW: 18848.8 Da    PI: 10.9769
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G223400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-1376118548
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         T +Ed  l + vk+lG + W+ Ia+ ++  R +kqc++rw+++l
  Seita.3G223400.1.p  76 TLDEDRSLEKHVKKLGEKKWSMIAKNLP-DRIGKQCRERWLNHL 118
                         789*************************.*************97 PP
2Myb_DNA-binding32.42.1e-10126157336
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                         +WT+ E++ +v +++++G++ W++ a++++ gR 
  Seita.3G223400.1.p 126 AWTEKEEKVIVALHRKHGNK-WAKMAKRIP-GRP 157
                         8*******************.*********.996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.41967122IPR017930Myb domain
SMARTSM007178.4E-1071120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-1972121IPR009057Homeodomain-like
CDDcd001675.26E-1276118No hitNo description
SuperFamilySSF466892.04E-2276159IPR009057Homeodomain-like
PfamPF139211.5E-1377133No hitNo description
Gene3DG3DSA:1.10.10.601.1E-14122158IPR009057Homeodomain-like
PROSITE profilePS512949.222123166IPR017930Myb domain
SMARTSM007170.12123164IPR001005SANT/Myb domain
CDDcd001673.18E-6126156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSILLGKTMS RKMARFRNKM LPIFRVPAAD GGLGYGGAIC GNHALLGNTV PSENTLVSQV  60
NAEEDARTYN QRGQRTLDED RSLEKHVKKL GEKKWSMIAK NLPDRIGKQC RERWLNHLSP  120
DIKTTAWTEK EEKVIVALHR KHGNKWAKMA KRIPGRPESN FSRSSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-287215927114MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G223400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961912.11e-121transcription factor MYB98-like
SwissprotQ9S7L24e-29MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A368QHQ11e-120A0A368QHQ1_SETIT; Uncharacterized protein
STRINGPavir.J19808.1.p2e-34(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2759645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-31myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]