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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Seita.3G200500.1.p |
| Common Name | LOC101785901, SETIT_021890mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
GRAS |
| Protein Properties |
Length: 495aa MW: 51828.4 Da PI: 6.0697 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.3G200500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 278.5 | 2.1e-85 | 115 | 485 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
+ lL+ecA avs g+l+ a+ +L +l ++asp++ + +Rl+ayft+A+aarl++s+ ++++ l+p ++ + aa+++f++vsP+
Seita.3G200500.1.p 115 IALLMECAVAVSVGNLADANGMLLELAQMASPYApSCGERLVAYFTKAMAARLMSSWVGICAPLAPPFAA------VHAAFRAFYNVSPLA 199
689*******************************8889***********************888666554......678899********* PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
+f++l++Nq Ilea++g+ vHi+D+d+ G lQW++Ll aLa+Rp+gpp lR+Tg+g s+ +l+ tg++La +A++lgvpfef +
Seita.3G200500.1.p 200 RFAYLACNQGILEAFHGKCLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPVLRVTGFGM----SASALHDTGNQLAGLASKLGVPFEFYA 286
****************************988447**************************....9************************** PP
GRAS 181 lvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.........sFlerfl 258
++ + +d + + +v + gEalaV++ h l+d ++ +++lv+ l+Pkv+++veqe +++ Fl+rf+
Seita.3G200500.1.p 287 VARRPGDDADAAAAAVPSrrpGEALAVHWLR--HALYDAAGDDGA----TMRLVRWLEPKVLTLVEQERGApGDGgggagnergHFLDRFV 371
888889999888887755567********98..888855555555....*******************6664444566777778******* PP
GRAS 259 ealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
+al++ysalfdsl a+ p+++ r+ vE+ +lgrei nv+a g +r r + ++ W+ l + GF + + +a+ a ++ +
Seita.3G200500.1.p 372 SALHHYSALFDSLGASRPADEdASRHLVEHGVLGREIGNVLAVGGPSRSGRDK-FGCWQTELARHGFLRAGGGGRAQLVAG----ACPaGL 457
*************88888877699***********************999987.**************9999998766665....555566 PP
GRAS 348 gyrveeesgslv.lgWkdrpLvsvSaWr 374
gy+v ++++ v lgWk+ pL++vS W+
Seita.3G200500.1.p 458 GYTVADDQDGTVrLGWKGTPLYAVSTWT 485
7****88777666**************6 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 495 aa
Download sequence Send
to blast |
MSTGRGSDMQ DSLSLMQFHD PYLYGGGAGG ANLPLSSHSF LPHHHDFVHA DDRCPGKDVP 60
EFVDQAAAEV SCEQELAVSK EVSEGGGDGA VEEQNNGAAT TAARGEEEAH GVRMIALLME 120
CAVAVSVGNL ADANGMLLEL AQMASPYAPS CGERLVAYFT KAMAARLMSS WVGICAPLAP 180
PFAAVHAAFR AFYNVSPLAR FAYLACNQGI LEAFHGKCLV HIVDLDVVPG GALQWLSLLP 240
ALAARPGGPP VLRVTGFGMS ASALHDTGNQ LAGLASKLGV PFEFYAVARR PGDDADAAAA 300
AVPSRRPGEA LAVHWLRHAL YDAAGDDGAT MRLVRWLEPK VLTLVEQERG APGDGGGGAG 360
NERGHFLDRF VSALHHYSAL FDSLGASRPA DEDASRHLVE HGVLGREIGN VLAVGGPSRS 420
GRDKFGCWQT ELARHGFLRA GGGGRAQLVA GACPAGLGYT VADDQDGTVR LGWKGTPLYA 480
VSTWTWCPSP HAQR*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ726962 | 0.0 | KJ726962.1 Zea mays clone pUT3662 GRAS transcription factor (GRAS56) gene, partial cds. |
