PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G194200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YC
Protein Properties Length: 343aa    MW: 36767 Da    PI: 4.86
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G194200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC53.36.2e-17351151898
               NF-YC  18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                         ++++   rikki++adedv +i+  +Pvl+ska elf+ +l  r++  +  +  +t+  s ++++++  +++dfl ++v +
  Seita.3G194200.1.p  35 DTHFSAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQTYNVYDFLREVVSK 115
                         5678889*********************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.4E-2232101IPR009072Histone-fold
PfamPF008088.3E-1542100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.29E-1847117IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MRKKLDTRFP ALVDKLCSGE ETSGTVSGAM RKKLDTHFSA PRIKKIMQAD EDVGKIALAV  60
PVLVSKALEL FLQDLCDRTY DITIRKGVKT VGSSHLKQCI QTYNVYDFLR EVVSKVPDTG  120
TSDAIADDKL GKRRKAEEDG SEEELKRTRN EAESHTSNGR GRGRGRGRGR RGGRGAWKEV  180
VITHEQFVEN QSSKPAGLKV EIADEVPDAT EAKEATPVSS ARASIRNIDL NLDPAEEDDE  240
VAVPPEAQPS APATDPAAAN LGLTAPATSS AAANLGLTTP ATSSAATTAG PSVPGLNEGA  300
KLKDLLGGWE LPDMNKMDMD PVQFALSSNH KLDDDEDYDN ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-1931101575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159168RGRGRGRGRG
2159169RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G194200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0554820.0BT055482.1 Zea mays full-length cDNA clone ZM_BFb0340H19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961645.10.0dr1-associated corepressor isoform X1
TrEMBLA0A368QGQ10.0A0A368QGQ1_SETIT; Uncharacterized protein
STRINGSi022720m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-51nuclear factor Y, subunit C11