PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G181900.1.p
Common NameLOC101757931, SETIT_022833mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 295aa    MW: 30831.7 Da    PI: 8.7343
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G181900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP951.5e-2958157399
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaa 91 
                         g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++ +    +  ss +a + + g a 
  Seita.3G181900.1.p  58 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQHEIDKLPPLQFPPHAQDlvAHLPSSMMAPFANGGGAD 148
                         78*************************************************************9999933334444444444444444333 PP

                 TCP  92 ksaa.kskk 99 
                         +++a  +  
  Seita.3G181900.1.p 149 RASAaANAT 157
                         333323333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.68859117IPR017887Transcription factor TCP subgroup
PfamPF036349.3E-2759133IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MISGNLTNEE LAASRCTKAE GPAAGAVAVA AKSPAVPSSR HWPPSTESRI VRVSRVFGGK  60
DRHSKVRTVK GLRDRRVRLS VPTAIQLYDL QDRLGLSQPS KVVDWLLDAA QHEIDKLPPL  120
QFPPHAQDLV AHLPSSMMAP FANGGGADRA SAAANATTGA ASAAMVDGDK RHCHGAGIKG  180
LMGLNNPVGL VNGAMPLAHG LYYTAGEPWA NGNSVHDQVS HHGTSPQTVA HHSPFSSLLS  240
LAPGPQLVFY SPEGGGFAMK EAADHQFPVD NLDHSQGQLS LSSARSFLHP GSQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2064118155Putative transcription factor PCF6
5zkt_B5e-2064118155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G181900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563580.0EU956358.1 Zea mays clone 1561243 TCP family transcription factor containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961521.10.0transcription factor TCP13 isoform X1
RefseqXP_004961522.10.0transcription factor TCP13 isoform X1
RefseqXP_012700333.10.0transcription factor TCP13 isoform X1
TrEMBLK3Z8G30.0K3Z8G3_SETIT; Uncharacterized protein
STRINGSi022830m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.15e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5