PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G180700.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 243aa MW: 25441.9 Da PI: 10.1548

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G180700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.1	6.9e-37	103	160	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 e+ l+cprC s++tkfCy+nny+++qPr+fC+aC+ryWt+GGa+rnvPvG+grrkn+ Seita.3G180700.1.p 103 EARLPCPRCRSRDTKFCYFNNYNVNQPRHFCRACHRYWTAGGAIRNVPVGSGRRKNRP 160 56789**************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.1E-30	105	159	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.463	106	160	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-25	107	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MADTSLLCFG ENHRKPAIHT YASRDMLPHV ELPVRAAAAC TGAAGIKLFG KVITTQQQPL 60 PAPPMHAGGN APPRLQNQAP PAPGRGSADL LEEAARARAA AAEARLPCPR CRSRDTKFCY 120 FNNYNVNQPR HFCRACHRYW TAGGAIRNVP VGSGRRKNRP VLPPMPPPHA ATNTGADHAS 180 SGSGSPPVFA ASGLAVPYRG SPFHLAPPSP ACTAASGLPE ATTGQYWWLV AGGAVASSDR 240 AF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G180700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727006	1e-114	KJ727006.1 Zea mays clone pUT3982 C2C2-DOF transcription factor (DOF44) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963664.3	1e-176	dof zinc finger protein 2-like
TrEMBL	A0A368QG72	1e-174	A0A368QG72_SETIT; Uncharacterized protein
STRING	AC209819.3_FGP009	3e-56	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26790.1	1e-30	Dof family protein

Link Out ? help Back to Top
Phytozome	Seita.3G180700.1.p