PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G179300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARF | ||||||||
Protein Properties | Length: 678aa MW: 74050.2 Da PI: 7.0534 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.6 | 1.2e-23 | 130 | 231 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++++iyr++++r++lt+GW++F + ++L +gD v+F Seita.3G179300.1.p 130 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyeQLRP--SQELIAKDLHGMKWRFRHIYRGQPRRHLLTTGWSSFINKKKLVSGDAVLFL- 217 99****************************9866664..459************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+++v+r+ Seita.3G179300.1.p 218 -RGNDGELRLGVRRA 231 .4489999****996 PP | |||||||
2 | Auxin_resp | 103 | 3.8e-34 | 256 | 336 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a++++++s+F++++nPr+++seF+v++ k++k l+ ++s GmRfk+ fe+ed+++r+ G+++g+s++dp+rWp+SkWr+L Seita.3G179300.1.p 256 VASSLENRSIFHICFNPRTGASEFIVSYGKFLKGLNYPFSTGMRFKVGFENEDANQRS-HGLISGISEVDPIRWPGSKWRCL 336 578899*************************************************999.9*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-42 | 124 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-38 | 127 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.37E-21 | 128 | 230 | No hit | No description |
Pfam | PF02362 | 1.3E-21 | 130 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-23 | 130 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.07 | 130 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.1E-28 | 257 | 336 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 678 aa Download sequence Send to blast |
MGIDLNAVEE DELAGPAVCG ELWHACAGAG VALPRRGGAV VYLPQAHLAA AGDGGEVPAS 60 AAARVPPHVA CRVVDVELCA DAATDEVYAR LALVAEGKMF GRNNHDRETE VNCEMEDGDG 120 GKKLRTSHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YEQLRPSQEL IAKDLHGMKW 180 RFRHIYRGQP RRHLLTTGWS SFINKKKLVS GDAVLFLRGN DGELRLGVRR AVPLKNELLL 240 EAVNSTDSKL RTLSAVASSL ENRSIFHICF NPRTGASEFI VSYGKFLKGL NYPFSTGMRF 300 KVGFENEDAN QRSHGLISGI SEVDPIRWPG SKWRCLLVKW DDDTKCNHRN RVSPWDIEGI 360 SSSISMTNCL SSVSKRTKLC FPQGDLDAPI LDGNGRPDSM ETECFHRVLQ GQELVRTRTH 420 GVAWSHSSDT PKCQGSCERR FSADVWNCKM NDAMSGFRHR NANGFAYQPL GFSESVRFSE 480 VLQGQEMSQA VPSFLGAALD ARVQNGRIGS FDYVHRSTVS QGYPLQQFNL PATEVHSPSS 540 VLMVNQTTAL QPELEGMTNR EEANGSRYAP IAVRREAERW PSTQQPRASG NGSEVFNTTE 600 ASAPATAAKP VDRGVGRSSC RLFGFSLTDK ILGAEEDGVK EGNYEADHQT PRALDLFGHS 660 QSAPSALHAL CAAPLGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 6e-97 | 17 | 362 | 18 | 357 | Auxin response factor 1 |
4ldy_B | 6e-97 | 17 | 362 | 18 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G179300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961506.1 | 0.0 | auxin response factor 14 | ||||
Swissprot | Q0DGS1 | 0.0 | ARFN_ORYSJ; Auxin response factor 14 | ||||
TrEMBL | A0A368QGL3 | 0.0 | A0A368QGL3_SETIT; Auxin response factor | ||||
STRING | Si021589m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5113 | 27 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-154 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G179300.1.p |
Publications ? help Back to Top | |||
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