PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G163100.1.p

Common Name

LOC101762543, SETIT_022274mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 393aa MW: 40517 Da PI: 7.2181

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G163100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.2e-05	289	329	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR r+ +++ L++l+P +++ a++L +A Y+k L Seita.3G163100.1.p 289 ARLRRGRVSERLRVLQRLVPGG-----SRMDTASMLDEAASYLKFL 329 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.706	280	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-10	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.9E-12	286	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.07E-8	286	334	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.6E-8	289	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MDDFGGWSMQ YAAEPCLPSR PSDDGLLSAF LDGGFDLRSD HGHLDLPSSY PVQSLMLCHD 60 AESLSDGLTA DFMGLDTADV VPSVVAGAVE DSLLDPFVYA PNVVTVAEEP AQTAASNTAF 120 SGYSSSTGGG NWNISSGESN TCGGGGGGYD TEVASPCAVS RAALLQTTTG VPPSKRKPGK 180 YPAVAAPGTK AVAGRRGEKR AAATSSSSTS ITFTGQGRHD HGAAGGPASG GYEPDSEAIA 240 QVKEMIYRAA AMRPVHQLVC GAAEPPSSQA ARPRRKNVRI SSDPQTVAAR LRRGRVSERL 300 RVLQRLVPGG SRMDTASMLD EAASYLKFLK SQLKALERAS PSNGSYHIGS FLQSYMGSSL 360 GGGGGTSAST VHAFGKDSAI GGYAKSNRNM QL*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MDDFGGWSMQ YAAEPCLPSR PSDDGLLSAF LDGGFDLRSD HGHLDLPSSY PVQSLMLCHD  60
AESLSDGLTA DFMGLDTADV VPSVVAGAVE DSLLDPFVYA PNVVTVAEEP AQTAASNTAF  120
SGYSSSTGGG NWNISSGESN TCGGGGGGYD TEVASPCAVS RAALLQTTTG VPPSKRKPGK  180
YPAVAAPGTK AVAGRRGEKR AAATSSSSTS ITFTGQGRHD HGAAGGPASG GYEPDSEAIA  240
QVKEMIYRAA AMRPVHQLVC GAAEPPSSQA ARPRRKNVRI SSDPQTVAAR LRRGRVSERL  300
RVLQRLVPGG SRMDTASMLD EAASYLKFLK SQLKALERAS PSNGSYHIGS FLQSYMGSSL  360
GGGGGTSAST VHAFGKDSAI GGYAKSNRNM QL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	275	RPRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G163100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065889	1e-119	BT065889.1 Zea mays full-length cDNA clone ZM_BFc0179C07 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961359.1	0.0	transcription factor BHLH089
Swissprot	A0A0P0WQ90	5e-77	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	K3Z6V5	0.0	K3Z6V5_SETIT; Uncharacterized protein
STRING	Si022274m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	5e-32	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.3G163100.1.p
Entrez Gene	101762543

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]