PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G148300.1.p
Common NameLOC101782384, SETIT_022565mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 344aa    MW: 37074.9 Da    PI: 10.5573
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G148300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.16.3e-1537123186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                         +W++ e+ aL+ a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk++++++        s +++f++
  Seita.3G148300.1.p  37 CWSDGETAALVSAWGSRYVELNRGNLRQKQWQEVADAVnsrrgasARRRPPRTDVQCKNRVDTLKKKYKAERARNAP------SGWSFFHE 121
                         7*****************************************999999999************************97......47****** PP

            trihelix  85 le 86 
                         l+
  Seita.3G148300.1.p 122 LD 123
                         98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2635125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEVREMAMAA AAAAAAAGGG GGKLPPPNPN LPYREDCWSD GETAALVSAW GSRYVELNRG  60
NLRQKQWQEV ADAVNSRRGA SARRRPPRTD VQCKNRVDTL KKKYKAERAR NAPSGWSFFH  120
ELDRLVGPTL SASASKRPPS SSPATQFAMP MPLHPPAVRN HASPSPSPPP PMALPLPNYH  180
HRRSPLPAAA LIQKEAAAAA APVSDSEDSD DVGGNNNHNS QRSPSHSVSS LSGNNKKRSR  240
DEAGSGGDKG CKELARAIEA FAEMYERVES AKQKHALQME RQRIEFLKQL EVKRMENFVE  300
AHVKLARAKR PKKTKVGTTD GAGAMELVAT VASLPFVSTS TLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G148300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961239.10.0trihelix transcription factor ASIL2
TrEMBLK3Z7P50.0K3Z7P5_SETIT; Uncharacterized protein
STRINGSi022565m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-31sequence-specific DNA binding transcription factors