PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G142700.1.p | ||||||||
Common Name | SETIT_024214mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GATA | ||||||||
Protein Properties | Length: 231aa MW: 23561.5 Da PI: 8.4193 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.6 | 2.3e-20 | 108 | 142 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ Seita.3G142700.1.p 108 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 142 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 14.417 | 102 | 138 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.6E-20 | 102 | 154 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.9E-14 | 103 | 142 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.6E-17 | 106 | 142 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.57E-13 | 107 | 139 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 108 | 133 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.1E-18 | 108 | 142 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MLQELALCAC GRFYAGGCGG RCAGAAAASS AFSMLFPVAV EQCYYSKEDD RSPYVGGGAV 60 DCTLSLGTPS TRRAEAGGRA RAAGGGGGGA APSCKESADR GSPPARRCAN CDTTSTPLWR 120 NGPRGPKSLC NACGIRYKKE ERRAAAAVAP APAPQDGSYA CGGYARQPPP PQWGCYGPVA 180 AAKSASFGMY GGGDVVDAAA DGPCLSWMLN VMPSSPAFAV RERPTLFQYY * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00110 | ampDAP | Transfer from AT2G18380 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G142700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681231.1 | 1e-162 | GATA transcription factor 15 | ||||
Swissprot | Q9ZPX0 | 7e-31 | GAT20_ARATH; GATA transcription factor 20 | ||||
TrEMBL | K3ZCD9 | 1e-161 | K3ZCD9_SETIT; Uncharacterized protein | ||||
STRING | Si024214m | 1e-161 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 2e-25 | GATA transcription factor 20 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G142700.1.p |
Publications ? help Back to Top | |||
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