PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G142100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 28814.7 Da PI: 10.9005 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.9e-17 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd lv++++ +G g W+ ar g++Rt+k+c++rw++yl Seita.3G142100.1.p 22 KGPWTVEEDHVLVNYIAAHGEGAWNNLARAAGLNRTGKSCRLRWLNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.6e-17 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+e++v++ +++G++ W++Ia++++ gRt++++k++w++ Seita.3G142100.1.p 75 RGNMTAEEQERIVQLQARWGNK-WSRIAKHLP-GRTDNEVKNFWRT 118 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.427 | 17 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.95E-30 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-13 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-15 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.32E-9 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 24.483 | 70 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-15 | 75 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-22 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.02E-11 | 77 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MQSAVDAVAG VEQVVPQPAV RKGPWTVEED HVLVNYIAAH GEGAWNNLAR AAGLNRTGKS 60 CRLRWLNYLR PDVRRGNMTA EEQERIVQLQ ARWGNKWSRI AKHLPGRTDN EVKNFWRTKI 120 QQKKHKNKEH SAIETIITVA GVCSGMACKD TPAITEDQGS SNYSGRTGVT QDYGIVRQQQ 180 PNISSAADYL SLRCAWRSHW RWRLGLRSGV PGRVGRELLG HRRRLWTTMQ SYQARTCSFA 240 RRGEGGFAVI RILAD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 13 | 123 | 18 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G142100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120986 | 3e-33 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. | |||
GenBank | AC120990 | 3e-33 | AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence. | |||
GenBank | AP014961 | 3e-33 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 3e-33 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699923.1 | 1e-142 | transcription factor MYB24 | ||||
TrEMBL | A0A368QF26 | 0.0 | A0A368QF26_SETIT; Uncharacterized protein | ||||
STRING | Si024431m | 1e-126 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 1e-60 | myb domain protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G142100.1.p |