PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G138600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YB
Protein Properties Length: 177aa    MW: 19676.8 Da    PI: 8.0316
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G138600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB165.85.5e-5219111294
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +eqdrflPian+srim++ +P n+ki+kdake+vqecvsefisf+tseasdkc +ekrktingddl+w+l+tlGfe+yveplk ylk yre
  Seita.3G138600.1.p  19 KEQDRFLPIANISRIMRRGVPDNGKIAKDAKESVQECVSEFISFITSEASDKCMKEKRKTINGDDLIWSLGTLGFEEYVEPLKHYLKLYRE 109
                         89***************************************************************************************** PP

               NF-YB  93 le 94 
                         + 
  Seita.3G138600.1.p 110 VS 111
                         85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-4615110IPR009072Histone-fold
SuperFamilySSF471138.38E-3621110IPR009072Histone-fold
PfamPF008083.3E-262487IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.6E-195270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.6E-197189No hitNo description
PRINTSPR006158.6E-1990108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSEAEGAPEA GGGGSFGGKE QDRFLPIANI SRIMRRGVPD NGKIAKDAKE SVQECVSEFI  60
SFITSEASDK CMKEKRKTIN GDDLIWSLGT LGFEEYVEPL KHYLKLYREV SIRSPRFSLR  120
LFTVVFVMCG TARAQCGSLG FLTCTRSPIY VCFLLWVHIV ILELLIGKEG RCNYAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4219109393NF-YB
4awl_B1e-4219109494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4219109494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G138600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787421e-113KM078742.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699849.15e-75nuclear transcription factor Y subunit B-4
SwissprotQ65XK12e-55NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4
TrEMBLA0A368QF471e-127A0A368QF47_SETIT; Uncharacterized protein
STRINGPavir.J18451.1.p5e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-52nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]