PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G134600.1.p
Common NameSETIT_022366mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 282aa    MW: 29034.2 Da    PI: 8.0873
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G134600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.81.9e-20160194135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++
  Seita.3G134600.1.p 160 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 194
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-19154206IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-14156198No hitNo description
PROSITE profilePS5011413.929158190IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-17158194IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.21E-15159191No hitNo description
PROSITE patternPS003440160185IPR000679Zinc finger, GATA-type
PfamPF003203.8E-18160194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MLRHCTGNSH HQSVATAAPG KTMASTTFSL FFPLPTKGPW PPAAADEAGA FDDDRSSITT  60
SPSSPSSSSS AGSVDCTLSL GTPSSRRAAA EPAEQAKRAA AQPAYPSVSA SASASAVSWD  120
VAADQPYYYC CHGSKPAAAG AAKGAVARAE HDQLLVDRRC ANCGTSSTPL WRNGPRGPKS  180
LCNACGIRFK KEERRAAATA MDQGQGACGY VAQRAQYGTK QAPADAVPYY GEAAFPCGGG  240
DVADAEAAPF LAWRLNVVAP SPAPAPAFAV WPERTSLFQY N*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G134600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963570.10.0GATA transcription factor 15
SwissprotQ6L5E56e-63GAT15_ORYSJ; GATA transcription factor 15
TrEMBLA0A368QF950.0A0A368QF95_SETIT; Uncharacterized protein
TrEMBLK3Z7460.0K3Z746_SETIT; Uncharacterized protein
STRINGSi022366m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.18e-24GATA transcription factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]