PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G134200.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ZF-HD
Protein Properties Length: 270aa    MW: 29146.8 Da    PI: 8.6199
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G134200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.73.2e-294093257
         ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                        ++vrY+eCl+NhAa+lGgh+vDGCgEfmp  g+    +alkCaACgCHR+FHR++ 
  Seita.3G134200.2.p 40 AAVRYHECLRNHAAALGGHVVDGCGEFMPGAGA--GDDALKCAACGCHRSFHRKDD 93
                        579**************************8555..589****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.8E-254292IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-184292IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.5E-254392IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.314492IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.2E-30173237IPR009057Homeodomain-like
SuperFamilySSF466898.55E-19175236IPR009057Homeodomain-like
TIGRFAMsTIGR015656.6E-27179235IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEFRGQEEPA EGMGASSAPP LAPAPAPAPV PGNHAVLPEA AVRYHECLRN HAAALGGHVV  60
DGCGEFMPGA GAGDDALKCA ACGCHRSFHR KDDGQRRQLL LPPPLAPPPP VTPTAPRVPL  120
LLPPPHPYAA AATHPHYAPP PFPYHGTPSG SGGTTTESSS EERGPPSAHL AAAQGHLRRK  180
RFRTKFTPEQ KEQMLAFAER LGWRMQKQDE ALVQQFCEQV GVRRQVFKVW MHNNKHSGSG  240
SGSRRQPQLP PQEQQSQQQP QPQPQQEQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-291802421880ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G134200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961117.10.0zinc-finger homeodomain protein 6-like
SwissprotQ688U37e-92ZHD6_ORYSJ; Zinc-finger homeodomain protein 6
TrEMBLA0A368QET70.0A0A368QET7_SETIT; Uncharacterized protein
STRINGPavir.J15638.1.p1e-122(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-26homeobox protein 21
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]