PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G133900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 94aa MW: 10314.5 Da PI: 9.5614 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.9e-09 | 4 | 50 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 g WT+ +++ +a + + + +W++Iar+mg +++ +++ ++ Seita.3G133900.1.p 4 GGWTQRQNKQFECALAVYDREtpdRWHKIARYMGGAKSADEVRRHFE 50 67*****************88*************889********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.319 | 1 | 53 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.5E-6 | 2 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.91E-11 | 4 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-6 | 4 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.48E-6 | 6 | 53 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MASGGWTQRQ NKQFECALAV YDRETPDRWH KIARYMGGAK SADEVRRHFE HLVADVAQIE 60 AGRVPFPRYD AGAGAGLDAA AAASRSSKYL KFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-21 | 6 | 74 | 11 | 78 | RADIALIS |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G133900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728246 | 5e-82 | KJ728246.1 Zea mays clone pUT6523 MYB-related transcription factor (MYBR57) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961115.1 | 1e-63 | protein RADIALIS-like 4 | ||||
TrEMBL | A0A368QEL2 | 3e-62 | A0A368QEL2_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J03074.1.p | 3e-44 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 1e-26 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G133900.1.p |