PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G120000.1.p
Common NameLOC101785213, SETIT_022660mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 326aa    MW: 33677.5 Da    PI: 7.0135
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G120000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.27.2e-304108199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalp.eeeredamsslvyeAearardPvyGavgvilklqq 85 
                         +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+l++a+p +e+r+++++sl+yeA+ r+ +PvyG+vg+++++++
  Seita.3G120000.1.p   4 SCNGCRVLRKGCTEACTIRPCLqwikaPDAQANATVFLAKFYGRAGLLNLIDAAPgDEQRPAVFRSLLYEACGRIVNPVYGSVGLLWSGNW 94 
                         6*************************999*************************62566******************************** PP

              DUF260  86 qleqlkaelallke 99 
                         +l+q+++e++l ++
  Seita.3G120000.1.p  95 HLCQAAVEAVLKGA 108
                         ********998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.4183110IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-244103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCTEACT IRPCLQWIKA PDAQANATVF LAKFYGRAGL LNLIDAAPGD  60
EQRPAVFRSL LYEACGRIVN PVYGSVGLLW SGNWHLCQAA VEAVLKGAPI VQISAEDAAA  120
ASPAHLHKAA ACYDIRHVAA KAKPAPAASS PAAGAADAAA APASSCPPAD DAQSSKAGGG  180
SSLLHKVAKP GRTRFKRASS SSSSKRQAHS KPPSDTEDDG HHVHLTADHA PPSRASSDDD  240
THHQEVSAAS LDTDASHVSQ AEQATTVAGE EDQHQEQQQQ QPAGLDLTLG FGSFAPLAAA  300
RPPTPPTVAG WSAADEPGVV GFRFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G120000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960981.10.0LOB domain-containing protein 41
TrEMBLK3Z7Z00.0K3Z7Z0_SETIT; Uncharacterized protein
STRINGSi022660m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-65LOB domain-containing protein 41