PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G113200.1.p
Common NameSETIT_024546mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 360aa    MW: 39784.9 Da    PI: 7.433
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G113200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12219263554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h   Er+RR+++N++f  L ++lP++     +K +Ka+iL +A +Y++ L
  Seita.3G113200.1.p 219 HVLSERKRREKLNDSFKALTTVLPPS-----PKKDKASILIRARDYLNTL 263
                         7789********************97.....69**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.208214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-15216282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.34E-13216268No hitNo description
Gene3DG3DSA:4.10.280.101.7E-14218279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9219263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-12220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDGCGSWPAL QGGGIGHGDA ASELSCGSKL QDLPISYQVE EQLQQIYLLM GMEEHGRHAE  60
APSSAFRSFS GSPDEASSLM PGSSTISRRH TPEVSSLKDI PLSPVTFGDH HHYGHSYGNL  120
DDTIQNMEQF RCQESHQEHA QRKNSHCGGA GAFMPYSRHL TTKKQPKPPG SGGQRAIKAS  180
MSALARMHMV RLAQWRHCRQ MEMAVAPPAR SNNCSQLQHV LSERKRREKL NDSFKALTTV  240
LPPSPKKDKA SILIRARDYL NTLKSRVSEL EERNRMLVEL QRHCNNGVDR DFVSGEEIEV  300
NIDRATTEEI SQELHLKIVV RSGCNSMDAV VGILECLKEI GDVRITAMDT GNRASEPPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227ERKRRE
2223228RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G113200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680938.10.0uncharacterized protein LOC101759857
TrEMBLA0A368QEH90.0A0A368QEH9_SETIT; Uncharacterized protein
STRINGSi024546m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-23bHLH family protein